Akkermansia massiliensis: J5W79_09510
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Entry
J5W79_09510 CDS
T09439
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
amak
Akkermansia massiliensis
Pathway
amak02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
amak00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
J5W79_09510 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amak03021
]
J5W79_09510 (rpoD)
Transcription machinery [BR:
amak03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
J5W79_09510 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
DUF2730
Motif
Other DBs
NCBI-ProteinID:
QWP72592
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All DBs
Position
2274386..2276479
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AA seq
697 aa
AA seq
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MSKSGDPSSSSPKKTSASKKASESKEKVASKPAAKTSKTTSKAAPAKKAPAKAAAPAAKK
PAAAKPSAEKKAPVKKASPAPAAGKAAVPAKKAPAKAPAAAPAKKAAAPAAKKAPAKPAE
KKPAEKKASKPAAKAEAPKKLSEILEEERKRAASRKVTNPIDAPEIQEKIRELIKLAKEQ
GYLTFDDINDSLPNDIVDQQDYEAIMDRLRSMAFDIIDASDVDSYTDRTRINTEEEDEEE
KLEAKMDILDDPVRMYLKQMGQVSLLTREEEVAISKRIEDAEQNVQRCVHRFGFIANAYL
DVAYRLLDNEERFDRVILDKKIDSRERYMKGLAQLCAQIQQTHQDASSAFRKLYRSKEAA
KSVKARQAEFDKITGVLVKLFGRLYFKHKVIEDFCSMIDEARDRVLRMQKKVAQDPSNKE
LKEHLAELELRMWMTADEMGEAYQELRKWLREARRAKDEMVEANLRLVISIAKKYTNRGL
SFLDLIQEGNMGLMKAVEKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIET
INKLMRVQKQLVQEYGREPTPEEIAEEIHLPVERVRSVLKMAQQPISLQAPVGDSDDTSF
GDFIEDKAAENPMEEASFSFLKEKIKDVLDTLTDREREVIEQRFGLRDGSPRTLEEVGRQ
FSVTRERIRQIEAKALRKLRHPTRISKIKGFLEMTES
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaatccggtgacccatcctcctcttctcccaagaagacttccgccagcaaaaaa
gcttctgaatccaaggaaaaagtagcatccaagcctgccgcaaaaacttccaaaaccact
tccaaggcagcccctgccaaaaaagcccccgccaaggccgccgctccggcggctaaaaag
cccgcagccgccaagccctcagcggaaaagaaagccccggtgaaaaaggcgtctccggcc
cctgccgccgggaaggccgcagtacccgccaaaaaggctccggcaaaggcgcccgcggcc
gcaccggccaagaaagccgccgctcccgccgccaagaaggctcctgccaagccggcggaa
aagaaacccgccgaaaagaaggcctccaagcctgccgctaaggcggaagctcccaagaag
ttgagcgaaatcctggaagaggaacgcaagagggccgccagccgcaaggtcacgaatccg
attgacgccccggaaatccaggaaaaaatccgtgaactgatcaagctcgccaaggagcag
ggctacctgacttttgacgacatcaatgactcccttcccaacgacatcgttgaccagcag
gactatgaggccatcatggaccgcctgcgcagcatggcgtttgacatcattgacgcgtcc
gacgtggacagctacacggaccgcacccgcatcaacacggaggaagaagacgaggaggaa
aagcttgaagccaagatggacattctggacgaccccgtccgcatgtacctgaagcagatg
ggccaggtttccctgctcacccgtgaagaagaagtggccatctccaagaggattgaggat
gcggaacagaacgtccagcgctgcgtgcaccgcttcggcttcattgcgaacgcctatctg
gacgtggcctaccgcctgctggacaacgaggaacgctttgaccgcgtcatccttgacaag
aagatcgactcccgcgaacgctacatgaaggggctggcccagctctgcgcccaaatccag
cagacccatcaggacgcttccagcgccttccgcaagctgtaccgcagcaaggaggccgcc
aagtccgtgaaggcccgccaggcggagttcgacaagatcaccggcgttctggtgaagctc
ttcggccgcctgtacttcaagcacaaggtgattgaggatttctgctccatgattgacgag
gcccgcgaccgcgtgctccgcatgcagaagaaggtagcccaggatccgtccaacaaggag
ctcaaggaacaccttgcggaactggaactgcgcatgtggatgactgcggatgaaatgggg
gaagcctatcaggagctccgcaagtggctccgcgaagcccgccgggccaaggacgaaatg
gtggaagccaacctgcgcctggtcatttccattgccaagaagtacaccaaccgcggcctt
tccttcctggacctcattcaggagggcaacatgggcttgatgaaggcggtggaaaagttc
gaataccgccgcggctacaaattctccacgtatgccacctggtggatccgccaggccatc
acccgctccattgcggaccaggcccgcaccatccgcattcccgtgcacatgattgaaacc
atcaacaagctgatgcgcgttcagaaacagctggtgcaggaatacggccgcgaacctacg
ccggaggaaatcgcggaggaaatccacctgcccgtggaacgcgtgcgttccgtgctgaaa
atggcccagcagcccatttccctgcaagcccccgtaggggattccgacgacacctccttt
ggtgacttcattgaagacaaggcggcggaaaatcccatggaggaagcctccttctccttc
ctgaaagagaaaatcaaggatgtgctggacacccttacggaccgcgagcgcgaggttatt
gaacagcgcttcggcctccgggacggcagcccccgcaccctggaggaagtggggcgccag
ttcagcgtcacgcgggaacgcatccgccagattgaggccaaggccctccgcaagctgcgc
catcccacgcgcatcagcaagatcaagggattcctggaaatgacggaatcctga
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