Alteromonas mediterranea U4: I607_01050
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Entry
I607_01050 CDS
T02720
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
amal
Alteromonas mediterranea U4
Pathway
amal03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
amal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
I607_01050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amal03400
]
I607_01050
DNA repair and recombination proteins [BR:
amal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
I607_01050
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
I607_01050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_29
AAA_16
AAA_23
RsgA_GTPase
nSTAND1
AAA_22
DnaJ_CXXCXGXG
nSTAND3
SLFN-g3_helicase
NACHT
AAA_25
Viral_helicase1
cobW
AAA_21
T2SSE
ScfRs
Motif
Other DBs
NCBI-ProteinID:
AGP84022
LinkDB
All DBs
Position
complement(231764..234595)
Genome browser
AA seq
943 aa
AA seq
DB search
MDKIEIRGARTHNLKNIDLTLPRDKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
ARQFLSMMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLMFARVGTPRC
PDHDVPLDAQTVSQMVDKVLAMPEGSKLMLLAPIVKERKGEHVKALQNLSAQGFIRARID
GEVCDLSDPPPLDLHKKHTIEVVVDRFKVRDDMALRLSESFETALSLAGGNAVVADMDDK
DAEEIVFSANFACPHCGYSISELEPRLFSFNNPAGACPTCDGLGTRQFFDPARVVGNTEL
SLSGGAIRGWDKRSYYYFQMLQAVADHYDFSLTAPFEELDKKHQDIVLYGSKGKSLSFKY
INERGDVMERKHPFEGIIPNMERRYRETESNSVREELAKYLSQQHCSSCNGTRLRVEARN
VFIQDTNLPAIANMSIADAYGFFETLQLEGQRAQIAEKILKEIMDRLRFLVNVGLNYLSM
SRSADTLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLNTLTHLRDLGNT
VLVVEHDEDAIREADYIVDIGPGAGVHGGEIIAEGSLEDIKNSEDSLTGKYLSGREKIDI
PASRTPVKDDKWLELTGATGNNLQSVDLRIPTGVMTCVTGVSGSGKSTLINDTFYKIAQR
ELNKATTSEPAPHKSMTGLELLDKVVDIDQSPIGRTPRSNPATYAGIFTPIREMFAGTQE
SRSRGYKPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDVYVPCDVCQGKRYNRETLEIKY
KDKNIHEVLEMTVEDAREFFDAIPSISRKLQTLMDVGLSYIRLGQAATTLSGGEAQRVKL
AKELSKRDTGQTLYILDEPTTGLHFHDIKQLLAVLHRLRDHGNTVVVIEHNLDVIKTADW
IVDLGPEGGSGGGQIIAEGTPEHVAEQEVSHTGRFLKPMLTQA
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atggataaaatcgaaattcgcggtgctcgcacccacaacttgaaaaacatcgatttaaca
ctgccacgagacaaactggtggtgataaccggcctttctggctcgggtaaatcgtctcta
gcatttgacacgctatacgcagaaggccaacgacgttatgttgagtctttgtctgcctat
gcccgtcagttcctttccatgatggaaaaacccgatgttgatcatattgagggtttatcg
cctgcaatatccattgagcaaaaatcaacgtcacacaaccctcgctctaccgtaggtacc
atcaccgaagtttacgattacttgcgactgatgtttgcccgtgtaggtacgcctcgctgc
cctgatcacgatgtaccgctagacgcccagaccgtcagtcaaatggtggataaagtgttg
gcgatgccagaaggcagtaagctaatgctattagcgcctatcgttaaagagcgtaaaggt
gaacacgtaaaagctttgcaaaacctctcagcacagggctttattcgtgcgcgcattgat
ggagaggtatgtgacctatcggatccgccgccgctagacctgcacaagaagcacaccatc
gaagtggtggtagatcgtttcaaggtgcgcgacgacatggcgcttcggttatctgagtca
tttgaaacggcacttagtcttgctggaggaaacgctgtcgtagcagatatggacgacaaa
gacgctgaagaaattgtcttttcagctaactttgcatgtccgcactgcggctacagcatt
agcgagcttgagcctcgactgttctcgtttaacaacccagcgggcgcgtgtccaacatgt
gacggtttaggtacgagacaatttttcgacccggcacgcgtggttggcaataccgaatta
agcctctctggcggggcaatacgcggctgggataagcgcagttattattacttccaaatg
cttcaggcggtcgctgatcactacgattttagccttaccgctccgtttgaagagctagat
aaaaagcaccaagatatcgtgctttatggttcgaaaggtaagtcgttatcgtttaaatac
ataaacgagcggggcgatgtaatggagcgcaaacatccatttgagggcatcattcccaat
atggagcgccgctatcgcgaaactgagtcaaactcggtacgcgaagagttagccaaatac
ttaagtcagcagcattgcagtagctgcaacggcacacggcttcgcgtggaagcccgaaat
gtgtttattcaagacactaacttgcctgctattgcaaatatgtctattgccgatgcgtat
ggctttttcgaaacgttacagttagaaggtcagcgcgcgcaaatagccgaaaagatttta
aaagaaatcatggaccgtttgcgctttttggtaaacgtaggccttaactatctgtctatg
tcgcgaagcgccgataccctatcaggtggtgaagcccagcgtattcgattggcaagccag
attggcgctggtctagtgggcgttatgtatgtgctggatgagccttcaattggtctgcac
cagcgagacaatgagcgcctgctcaatacgcttactcacttacgcgacctcggtaacacc
gtactcgttgttgagcacgacgaagacgctatccgtgaagccgactatattgtagatatt
ggcccaggtgccggtgtacacggtggtgaaattattgccgaagggtcactggaagacatc
aaaaatagtgaagactcacttactggaaagtatctgtcgggtagagagaaaattgatatt
ccggcttcgcgtacacctgtaaaagacgacaaatggttggaacttacaggcgcaacaggt
aataacttgcaatcggtagacttacgcattcccacgggcgtaatgacgtgtgtaacaggc
gtttcaggctcgggtaaatcgacgctaataaacgacaccttttacaagattgcccagcgt
gaattaaacaaagcaaccacgtcggagcctgcgccgcataaatcgatgacgggcctagag
ctgctcgacaaagtcgtagacatcgaccagagccctatcggcagaacgccacgttcaaat
ccagccacctatgcgggtattttcacgcctattcgtgaaatgtttgctggcacgcaggag
tctcgctcccgcggttacaagccgggtcgctttagcttcaacgttaaaggcgggcgctgt
gaagcgtgtcagggtgatggtgtgattaaagtggaaatgcacttcttgccagatgtatat
gtgccttgcgatgtgtgccagggcaaacgctataaccgcgaaaccctagagataaagtac
aaagacaagaatattcatgaagtgctggaaatgaccgtggaagatgcgcgcgagttcttc
gatgcaattccatctatttcgcgcaaattgcaaacgcttatggatgtgggtttgtcttat
attcgacttggtcaagcggctaccacgttatctggtggtgaagcgcagcgagtgaaattg
gcgaaagagttgtcaaaaagagacactgggcagacactttacatcttggatgagccaacc
acgggtttgcacttccacgatattaaacagttattggccgtacttcacagacttcgcgat
cacggtaataccgttgtggttattgagcataacctagatgtgattaaaaccgcagactgg
attgtcgaccttggaccggaggggggatccggaggtggccagattattgcagaaggaaca
cctgagcatgtggcagaacaagaagtttcacatactggacgattccttaagcccatgctc
acacaagcttga
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