Alteromonas mediterranea U4: I607_03040
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Entry
I607_03040 CDS
T02720
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
amal
Alteromonas mediterranea U4
Pathway
amal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I607_03040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amal03019
]
I607_03040
03009 Ribosome biogenesis [BR:
amal03009
]
I607_03040
Enzymes [BR:
amal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
I607_03040
Messenger RNA biogenesis [BR:
amal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
I607_03040
Ribosome biogenesis [BR:
amal03009
]
Prokaryotic type
rRNA helicases
I607_03040
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
HEM4
AAA_30
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AGP84418
LinkDB
All DBs
Position
complement(671304..673073)
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AA seq
589 aa
AA seq
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MTTTVDMTFKDLNLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAA
FALPMLANIDPEQRKPQLLVLAPTRELAIQVAEAFQVYASFSQKIKVLPVYGGQSYDNQI
RQLKRGVQVVVGTPGRIIDHIKRKTLDLSELKFLVLDEADEMLRMGFIDDVELILSHAPE
ERQTALFSATMPGPIKKITQRYLKDPKHVKIASKVSTASTIRQRYCQIAPHHKLEALTRI
MEVEVFDGMIIFVRTKTATVELADKLSARGYDVEPLNGDIPQAARERTVEKLKQGKIDIL
VATDVVARGLDVERVSHVINYDIPYDSESYVHRIGRTGRAGRQGDAILFISHREKRLLFS
IEKTTKQPIEAMPIPSISEINETRLSRFKQSVAEATQDDSIESLMPIVEMIKEENEASPE
TIMAALLKIAQGDEPLILKESDRPDINSKPPRDNRDRNSRDGRDGRERKPRVPRGNRKPE
EGMQRFRIEVGHVHGAKPGNIVGAIANEANINSKHIGAIEIYDNFSTVDLPDGMPKETRD
TLSGTRVAGQRLNIREWSDTPPKRDGRGSRGDKGDRAPRGNRENRKRKN
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgacaacaactgtcgacatgacatttaaagacctcaatttaccagaaccaatcttacaa
gcccttgaaaaagttggctacgagaaaccgtctcctattcaagctgagagtattcctctt
ttacttgaaggacacgacttactcggtcaggcacagacagggacaggaaaaaccgctgcg
tttgccctgcccatgttggcaaatatcgatcctgagcaacgtaagccgcaattactggta
ttggccccaacccgtgaattagcaattcaggttgcagaggcgtttcaggtttatgcgagc
tttagtcaaaaaattaaagtacttccagtatacggcggtcagtcgtacgacaaccaaatt
cgccagcttaagcgcggcgttcaggtggttgttggtacaccaggccgtatcatcgaccac
attaagcgcaaaacactagacttaagcgaacttaagttcttagtgctagacgaagctgac
gaaatgcttcgtatgggctttatcgatgacgttgaacttattcttagccacgcaccagaa
gagcgccaaaccgcactgttctcggcaactatgcctggcccaattaagaagattactcag
cgatacttgaaagaccctaagcacgttaaaattgcgtctaaggtaagtacagctagcacc
attcgccagcgttattgccaaattgcaccacaccacaagcttgaagcgctaacgcgtatc
atggaagtggaagtattcgacggaatgatcatattcgtacgtacgaaaaccgctacggtt
gaactagcagataaactctctgctcgtggttacgacgtagaaccactaaacggtgatatt
cctcaggcagctcgtgagcgcactgttgaaaaacttaaacagggtaaaattgatatcctt
gtcgctaccgacgttgtagcccgtggtcttgacgttgagcgtgtaagccacgttatcaac
tacgatatcccgtacgacagcgaatcttacgtacaccgtatcggccgtactggtcgtgct
ggtcgtcaaggtgatgcgatcctatttatctctcaccgtgaaaagcgcttgttattctct
atcgagaaaaccactaaacagcctattgaagcaatgccaattccttcaattagcgaaatt
aacgaaacccgtttaagccgcttcaaacaatcggttgccgaagcaacccaagacgatagc
attgaatcattaatgcctattgttgagatgattaaagaagaaaacgaagcgtctcctgaa
accatcatggctgcgctacttaaaattgcgcaaggcgacgagccgttaattcttaaagaa
tcagatcgaccagacatcaacagcaagcctccacgcgataatcgtgatagaaactctcgc
gatggtcgtgatggccgcgaaagaaagccaagagtaccacgtggtaaccgcaagccagaa
gaaggcatgcagcgcttccgtattgaagtaggtcatgttcacggcgctaagcctggcaac
atcgttggcgctattgcgaacgaagcaaacataaactcgaagcacattggcgctatcgag
atttatgataacttcagtactgttgatttacctgacggtatgccaaaagaaacccgtgac
accctttcgggcacacgcgtagcaggtcagcgattgaacattcgtgaatggtcagacacg
ccacctaagcgcgacggtcgtggaagccgcggtgacaaaggtgatcgtgcacctagaggc
aaccgtgaaaaccgtaaacgtaagaactaa
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