Alteromonas mediterranea U4: I607_07205
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Entry
I607_07205 CDS
T02720
Name
(GenBank) diguanylate cyclase/phosphodiesterase
KO
K18765
RNase E specificity factor CsrD
Organism
amal
Alteromonas mediterranea U4
Brite
KEGG Orthology (KO) [BR:
amal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amal03019
]
I607_07205
Messenger RNA biogenesis [BR:
amal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
I607_07205
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Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
LapD_MoxY_N
DUF4407
Motif
Other DBs
NCBI-ProteinID:
AGP85239
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Position
complement(1599824..1601758)
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AA seq
644 aa
AA seq
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MKLTNQTNWGIVALLFLAFTALSVAELRELQLNTSEAVTLQAEKSAANYRKNIDQLSSLS
PQTEELVLSTFLESAVSQPHISYAAIVDASGSVIAKREAAIQNAVPSWFTSIDSNSELEK
RVPLGDSQRALVLTANKVEVYTRFTNVLLRNIIAFVALSLLVSLLVAVMNRRFKRPIEDT
VRKLNDMGSHNFTSPQVSASSGDCEQLTSTVNTLSSTLASKFDELTRQSELFKKEASKDS
LTKLANRGAFERHMRALLNENATSQEKELIIVRLAQLASINTKLGMVPGDNYVKAIANIL
VEETKNNSNVRFVFRLTGGDFALICEAMEKPARDLMLTNISKQCTSASPLRDGTKATYIG
ITRFTGTMSMPQVMESVDSALIAAMKTQSGWELASEISHVHSNTRWRERLNYIVAQQYAD
IMIQPVMSIEQNIPAYYETFGRFKDKDTNEVIPMSQLIPASERLDLIPQVDRLVTSIVFK
KMEVTSQQVAVNLSITSIANGEFRGWLVNELTQRQALCPRLLFEVEDAALIQYRDYAESL
CRQLINLGCRVTIEHFGDHFASLSGLRAIKPQFVKISGRLTQGIHTNKENQLFVSSLINI
ATGLNIKVIAEMVETEAESVALNKLGVEHQQGYYFAKPALWNVY
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgaagctaactaatcaaactaattggggtattgttgcccttttgtttttagcgtttact
gcattgtctgtcgccgaactacgtgagttacaattaaacacgtctgaggcggtcacgcta
caggctgaaaaaagcgcggcaaattatagaaaaaatattgatcagctctcctctctgtca
ccgcagacagaggagctagtccttagcacctttctagaaagtgcagtatctcagccccat
atatcttacgccgcaattgttgacgcaagcggtagtgtgatagccaaaagagaagcggca
attcaaaacgctgtaccatcgtggttcacgtcaatcgattccaattcagaattggaaaaa
cgcgtacctttaggtgatagtcagcgcgcgctcgtactcacagcaaataaggttgaggta
tacaccaggttcactaacgtactactaaggaatattatcgcctttgtcgcgctttcactg
cttgtttcattgttggttgcagtaatgaatcgacgatttaagcgacctatcgaagatacc
gttagaaaacttaacgacatggggagccataatttcacgtcgccccaagtgagtgcctct
tctggcgactgtgaacagttgacaagtaccgttaataccctttcaagcacgctagcctcg
aagttcgatgaacttacacgccagtctgagctatttaaaaaagaagcgagcaaagattca
ctaactaaactagccaacagaggggcgtttgagcgccacatgcgtgcgctattaaacgaa
aacgcaacctcacaagaaaaagagcttattattgtacggctagcgcaactggccagtatt
aataccaagttaggtatggtgccgggtgataactatgttaaagcgatagcgaacatcttg
gttgaagaaaccaaaaacaacagcaacgtgcgcttcgtgtttcgattgactggtggagat
ttcgcattaatttgcgaggccatggaaaagccagcaagagatctcatgctgactaacata
tcaaagcaatgcactagcgcctcgccattacgcgatggcaccaaagccacgtatatcggt
attactcgctttaccggcactatgtctatgccgcaagtcatggaaagtgtggatagtgcg
cttatcgctgccatgaaaacccaaagcggttgggagttggcctcggaaatatctcacgta
cacagcaatacgcgatggcgcgaacgacttaactatattgtcgctcagcagtatgccgac
attatgattcagccggttatgagtatagagcaaaatattcccgcttactatgagacattt
gggcgctttaaagacaaagataccaacgaagtcatacccatgtcgcagcttatccctgct
tctgagcgattagacctaataccacaagtcgacagactggttaccagcatcgtgtttaaa
aagatggaagtgacctctcagcaagtcgccgtcaatttaagtattacgtcaattgccaat
ggtgaatttagaggttggttggttaacgaattaacccagcgacaagcgctgtgccctagg
cttcttttcgaagttgaagatgccgcgctaatacagtatcgagactacgcagaatcgctg
tgcagacaattgatcaacctgggttgtcgagtcactattgaacactttggcgatcacttt
gcatccctctctggcctacgcgcgattaaaccgcagtttgttaaaatttccggaagactg
acccaaggtattcataccaataaagaaaaccagctgttcgtgtctagccttatcaatata
gcgactggcctgaatataaaagtaattgcagaaatggtggaaaccgaagccgaatctgtg
gctttgaacaagctaggtgtagaacaccagcaaggctattattttgctaaacctgcactt
tggaatgtgtattaa
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