Alteromonas mediterranea U4: I607_08775
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Entry
I607_08775 CDS
T02720
Name
(GenBank) DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
amal
Alteromonas mediterranea U4
Brite
KEGG Orthology (KO) [BR:
amal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amal03032
]
I607_08775
03400 DNA repair and recombination proteins [BR:
amal03400
]
I607_08775
Enzymes [BR:
amal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
I607_08775
DNA replication proteins [BR:
amal03032
]
Prokaryotic type
DNA Topoisomerases
I607_08775
DNA repair and recombination proteins [BR:
amal03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
I607_08775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
AGP85550
LinkDB
All DBs
Position
1962586..1963608
Genome browser
AA seq
340 aa
AA seq
DB search
MHEDDSHLSIKRIACGNKRFYYRYASGKKVTGQRVINRIKKLVIPPNWRDTFISRDSKAS
VQAIGYDEKGRKQYIYHEKWHEQQQVQKFERLIAFGNALPAFREHCISLISQSSWTLERA
CALVCLLLDYTGARVGNTQYSKENNTYGLTTLRRKHVQAQCDDSVELAYIGKHGKPRTLK
VNDPELASLICDCAQQQGYCLFRYQDHRKQWHDVTSEDVNAFIHEKLSEQFSCKDFRTWA
SSRFALTVMPNVYERVASSKTKKWESTLSKIVSAELGNTPAVCRKYYIHPKLFVIKNQGE
AFEKTLNRVRSLAGEDCTHITHLLPVEKLLLDVISTKSNE
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
gtgcatgaagatgatagccacctatcaattaagcgcattgcgtgcggaaataaacgtttt
tactatcggtacgccagtggtaagaaagttaccggtcaacgggtgataaaccgcataaag
aaactagttatcccaccgaattggcgagatacctttatcagccgcgacagtaaggcgagt
gttcaggcgattggatacgatgaaaaaggccgtaagcaatacatttatcatgagaagtgg
catgagcaacagcaggtacaaaagtttgagcggttgattgcttttggcaatgcccttcca
gcgtttcgagagcattgcatttctctcatttctcaatcttcctggacgctagagcgcgca
tgcgcgcttgtttgtcttttattagactacaccggcgctagggtagggaatacgcaatac
agtaaagagaacaacacctatgggcttacgacgctgcgacgcaaacacgttcaggcgcag
tgcgacgacagtgtagaacttgcgtacataggaaaacatgggaaaccgcgaaccctgaaa
gtgaatgacccagaattggcgtctttaatatgtgattgcgcacaacaacaaggttattgc
ttatttcgctatcaagatcaccgtaaacaatggcacgatgtaacgagcgaagatgtgaac
gcgtttatacatgagaagctgagcgaacaatttagttgtaaggactttaggacttgggcg
tcgagccgttttgccctaacggtgatgcccaacgtatatgaacgtgtagcaagttcaaaa
actaaaaagtgggaaagcacattaagtaaaatcgtatcagctgaactaggcaatacgcca
gcggtttgcagaaaatattatattcacccgaaactatttgttattaaaaaccagggggaa
gctttcgaaaagacgctaaatcgtgtgcgatcgctggctggtgaagattgtacacatatc
acgcacttactgcctgtagaaaagcttcttttggatgttatttctactaagagcaatgag
tga
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