Alteromonas mediterranea U4: I607_08805
Help
Entry
I607_08805 CDS
T02720
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
amal
Alteromonas mediterranea U4
Pathway
amal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I607_08805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amal03019
]
I607_08805
03016 Transfer RNA biogenesis [BR:
amal03016
]
I607_08805
Enzymes [BR:
amal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
I607_08805
Messenger RNA biogenesis [BR:
amal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
I607_08805
Transfer RNA biogenesis [BR:
amal03016
]
Prokaryotic type
tRNA degradation factors
I607_08805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
KH_2
OB_RRP5_4th
S1_2
Motif
Other DBs
NCBI-ProteinID:
AGP85556
LinkDB
All DBs
Position
1970011..1972122
Genome browser
AA seq
703 aa
AA seq
DB search
MTPITKSFQYGQHTVTLETGVIARQATAAVLASMDDTSVLVTVVGKKEAKPDQDFFPLTV
NYQEKAYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPEGFKNEVQVVVTVMSAN
PDIPTDIISMIGTSAALAISGIPFNGPIGAARVGFSNGEYILNTRAEEQAESQLDLVVAG
TEGAVLMVESEADVLSEETMLGAVMFGHEQLQTVVSAVNEFAAEVGTEKWDWAPEAENTA
LKDKVKALAEAEMTAAYQISDKLERKDAVTAATDKALEAILAEDEEQDKKEVLDLLHDLE
SDVVRSRILSGAPRIDGREPAMIRALDVATGILPRTHGSALFTRGETQAIVAATLGTERD
AQMIDELQGKRDSRFMLHYNFPPYCVGETGMIGSPKRREIGHGRLAKRGIQAVMPSEEEF
PYVVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKSDDNFVVLSDI
LGDEDHLGDMDFKVAGTTDGITALQMDIKIEGITKEIMQIALKQAKEARLHILNVMDEAI
GGHREELSEFAPRIYTMKIDQDKIRDVIGKGGAMIRQITEESDTNIEIEDDGTIKVFATE
RAKADIAIGKIEQVTAEIEVGKTYNGKITRIVDFGAFVEVLPGKEGLVHISQIAHERVNK
VTDYLKEGEMVDVKVMEIDRQNRVRLSIKELLEKPAPKSDDAE
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
gtgactcctattactaaatcatttcagtatggacagcatactgtaactctagagacgggt
gtaattgctcgtcaggcgacagctgcggttcttgcgagcatggacgacacgtctgtactg
gtaacagtagttggtaaaaaagaagccaagccagatcaagacttcttccctctaacagtt
aactaccaagaaaaagcatacgctgcgggtaaaatcccaggtggtttcttcaagcgtgaa
ggtcgtccatctgaaggcgaaacattgactgcgcgtcttatcgaccgcccaattcgccca
ttattcccagaaggcttcaaaaacgaagtacaagttgttgttactgtaatgtctgctaac
ccagatatccctacagacatcatctctatgattggtacttctgcagcccttgctatctct
ggtattccattcaacggcccaattggtgcggcgcgtgttggtttcagcaacggcgaatac
attctaaatacacgcgcagaagagcaagctgaaagccagcttgaccttgttgttgcgggt
actgaaggtgcagtacttatggttgaatcagaagctgacgtgctttctgaagaaactatg
ctaggtgcggtaatgttcggtcacgagcaacttcaaaccgtggttagcgcggttaacgaa
tttgctgctgaagttggcactgagaagtgggactgggcaccagaagcagaaaacactgca
cttaaagataaagttaaagcactagctgaagctgaaatgacagcggcttaccagatttct
gacaagttagagcgtaaagacgcggtaactgcagcaactgacaaagcactagaagctatc
cttgctgaagacgaagaacaagacaagaaagaagtactagaccttcttcacgatcttgag
tctgacgtagtacgttcacgcatcctttctggcgcgccacgtatcgacggtcgtgagcct
gcaatgattcgtgctctagacgtagcaactggtattcttcctcgtactcacggttctgca
ctatttacccgtggtgaaacgcaggcaattgttgctgctactttaggtacagagcgtgat
gcacagatgattgacgagcttcaaggtaagcgcgacagccgtttcatgcttcactacaac
ttccctccatactgtgttggtgaaaccggtatgattggctcgcctaagcgtcgtgaaatt
ggtcacggtcgtctagcgaagcgtggtattcaagcagtaatgccaagtgaagaagaattc
ccgtacgtagtacgtgtggtttctgaaatcacagaatcaaacggttcatcttcaatggcg
tcggtatgtggtacttcactagcgcttatggatgcgggtgttccaattaaagcgtctgtt
gcgggtatcgcaatgggcctagttaagagtgacgacaactttgttgtactttcagacatc
cttggtgacgaagatcatcttggcgacatggactttaaagtagcgggtactaccgacggt
attactgcacttcaaatggacattaagattgaaggtattactaaagaaatcatgcaaatt
gcgcttaaacaagcaaaagaagcacgtttgcacattcttaacgtaatggacgaagccatt
ggcggtcaccgtgaagagctaagtgaatttgctccacgcatttacacaatgaagattgac
caagacaagattcgtgacgttatcggtaaaggcggcgcaatgatccgccaaattactgaa
gagtctgacactaacatcgagattgaagacgacggtactatcaaagtcttcgcgacagag
cgtgcgaaagcagacatcgctattggcaagattgagcaagtaaccgctgaaattgaagtt
ggtaagacttacaacggtaagattacacgtattgtagacttcggtgcgttcgtagaagta
cttccaggtaaagaaggtcttgttcacatttcacaaatcgctcacgagcgtgtgaacaag
gttactgactaccttaaagaaggtgaaatggttgacgttaaggttatggaaatcgaccgc
cagaaccgtgtacgtttaagcattaaagagcttctagaaaagcctgcgcctaagtctgac
gacgcagagtaa
DBGET
integrated database retrieval system
