Alteromonas mediterranea U4: I607_09395
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Entry
I607_09395 CDS
T02720
Name
(GenBank) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
amal
Alteromonas mediterranea U4
Pathway
amal00040
Pentose and glucuronate interconversions
amal01100
Metabolic pathways
amal02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
amal00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
I607_09395
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
I607_09395
Enzymes [BR:
amal01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
I607_09395
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RicinB_lectin_2
Pectate_lyase_4
Ricin_B_lectin
Motif
Other DBs
NCBI-ProteinID:
AGP85674
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Position
complement(2096874..2098235)
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AA seq
453 aa
AA seq
DB search
MGSSDSDDENGPVTYHHNLYQNIDSRTPLLRHATAHAYNNHYVSLNESGMNPRIGGKIRA
ENNYFEDSKDVLGTFYTNDMGYWQVSGNIFDNITWTSSGNKNYPAGPNPSSTTSISIPYS
YSLDNASCVPSIIAATAGANKGLAVSDGDCSTTTPPDNGGGNGGGGNGDGSGTGTNLALS
AAADGSSKASGTSYGNVIDGDTSSYWSPNGSTGTINVKNLNATVNAVRIVSASGYENAIT
NWALVNYDTGVTLATGGAVPNVISFSDTTVNKISFVIQSSSTQPRVAEFEVYNGYSSGGG
RSGGSGNNGTVNGRYWISPVHSDKAVDVNGCGTANLTNIQQYAWLDNDCQKFAISQVDGI
WHRISPLNAPTKSLDINTSISGNGATVILYDYWGGDNQLFRFQSAGTGKWRIIPKWSELC
LDVSGNATADGTDIVQWTCTAGAQNQMFELISQ
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
gtgggatcaagcgattctgatgatgaaaatggtccggtcacctaccatcacaacctctat
cagaacatagattcgcgtacgcccttgctgcgtcacgccacagcccatgcgtacaacaat
cactatgtaagccttaatgaatcgggaatgaacccacgaattggtggtaaaatcagagct
gaaaataactactttgaagattcaaaggatgtactcggaacattttataccaacgacatg
ggttattggcaggtaagtggcaacatctttgacaacataacttggacgtcatctggcaat
aaaaactatcctgcgggccccaatccatcatctaccacatccattagcattccttatagc
tatagcttagataacgctagctgtgtgccttcaatcatagctgcaacggcaggggctaat
aaagggcttgctgtgtctgatggtgattgttcaacaactactccgccagacaatggtggc
ggtaacggcggtggcggcaacggcgacggctcgggaactggaacgaatttggcgctatct
gcagctgctgatggcagcagtaaagccagtggaacaagctatggaaacgttatagatggt
gacaccagttcctattggtctccaaatgggtcaactggcaccatcaatgtgaaaaacctg
aatgccacggtaaatgcagtgcgtattgtatctgcatcgggttacgaaaatgcgatcacc
aattgggcactggtcaattatgataccggcgtcaccttagcgacaggaggggctgtgccc
aacgttatttcgtttagcgatacaacagtgaacaaaatcagttttgttatacagtcgtct
tctactcagccccgtgtagccgagtttgaagtttacaatggttatagctcaggtggcggt
agaagcggcggtagcggcaataatggcacagtgaatggtaggtattggataagtccggta
cacagtgataaagcggtagatgtgaatggctgtggcaccgcaaacctcaccaacattcag
cagtacgcatggctagataacgattgtcagaagttcgcaatctcgcaagtagatgggatc
tggcaccgtatctcaccattgaatgcccctactaaatcgttagatatcaatacgtcaata
tctggtaatggagccacagtgatcctctatgattattggggcggtgataatcaattgttc
cggttccaatctgcgggtactggcaagtggcgtatcattccgaagtggagtgagttgtgt
ttagatgtgagtggcaacgcaacggcagatggtacagatattgtgcagtggacttgtact
gctggcgctcaaaaccaaatgtttgagttgatcagtcaatag
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