Alteromonas mediterranea U4: I607_10885
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Entry
I607_10885 CDS
T02720
Name
(GenBank) DNA-binding protein, H-NS family
KO
K03746
DNA-binding protein H-NS
Organism
amal
Alteromonas mediterranea U4
Brite
KEGG Orthology (KO) [BR:
amal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
amal03036
]
I607_10885
03400 DNA repair and recombination proteins [BR:
amal03400
]
I607_10885
Chromosome and associated proteins [BR:
amal03036
]
Prokaryotic type
Nucleoid associated proteins
HNS (histone-like nucleoid structuring protein)
I607_10885
DNA repair and recombination proteins [BR:
amal03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
I607_10885
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Histone_HNS_N
Histone_HNS
KxDL
DUF4317
YrbL-PhoP_reg
DUF7201
Snapin_Pallidin
DUF1451
GemA
DUF1664
Allexi_40kDa
Cytadhesin_P30
DUF4446
pre-PUA_NIP7
DUF2120
Motif
Other DBs
NCBI-ProteinID:
AGP85964
LinkDB
All DBs
Position
2423980..2424378
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AA seq
132 aa
AA seq
DB search
MSEFLDILTHGRRLQGAVKELSIEELEQVQEKLSGIIEKRKEKLLEQEKLKKEKLEKLAA
IKKQMEEAGLNVEDLQALNTDVNKKVGKKRPVKYKLVDETGEEHLWTGIGRMPRVYREAL
DSGKSLDDYAIS
NT seq
399 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaatttttagatattttaacccatggaagacgtttacaaggtgctgttaaggaa
ttaagcatagaagaacttgaacaagttcaggaaaaacttagcggtataattgaaaaaaga
aaagaaaaactactagagcaagaaaagcttaaaaaagagaaattagaaaagcttgctgca
attaaaaagcaaatggaagaagcaggtcttaacgtagaagatttgcaggcgttaaataca
gacgtgaataaaaaagtaggtaaaaagcgccctgttaaatataagcttgtggatgagaca
ggcgaagaacatctgtggacaggtattggccgcatgcctcgtgtttatagagaagcgctg
gatagcggtaagtctcttgacgattacgccattagttaa
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