Alteromonas mediterranea U4: I607_12210
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Entry
I607_12210 CDS
T02720
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
amal
Alteromonas mediterranea U4
Brite
KEGG Orthology (KO) [BR:
amal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
amal03016
]
I607_12210
Enzymes [BR:
amal01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
I607_12210
Transfer RNA biogenesis [BR:
amal03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
I607_12210
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
AGP86227
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All DBs
Position
complement(2729805..2730962)
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AA seq
385 aa
AA seq
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MQYQLITTFEHLEKVCEAAQRQEAVALDTEFVRTKTLTPHLGLIQLYDGHQLVLIDPLAI
DNMQPFVALLENTEVVKVLHSCSEDLEAFLTAFDTVPTPVFDTQIAGSILDMGPSLGYAK
LVELLCEISLDKGESRTDWLARPLREAQLSYAANDVLYLLPCYQQLASNVQALGKVHWIY
EEVALLVEKKRAQMPEDFAYLSIKNSWRLNSEQLTVLQALAAWRLNTARKKDLALNFVFK
EGHLFEAAQRLIDDKSGLSRINGVNHQSVRRYGDTIVTLIEEARARYAQTPEKLRLPIVQ
RLIDIAKYKKYLAELKTISEQIAKDNGVTTDVIASKKQLNQLLKWYWFPVDETRVQGLKP
DLLSTWRAPLFRPHVARLLGDEPTQ
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atgcaatatcaattaattacaacatttgaacatctagaaaaagtgtgcgaagccgcacaa
cgtcaagaggcagtcgcccttgatactgaatttgtgaggactaaaacccttactccccat
cttggccttattcagctatacgatggacaccagctagtacttatagaccccctcgctatc
gataacatgcagccatttgttgcgttgttggaaaataccgaagtcgttaaagtattgcat
tcgtgttctgaagatcttgaggcttttcttaccgcctttgatacggtgccaacgcctgtg
ttcgatacgcaaatagccggtagtatcttggatatgggcccctctctgggctatgccaag
ttagtggagctactttgcgagatcagcttagacaaaggcgagtcgcgaacggattggctg
gcaaggccgcttcgggaagctcaactgagctatgcggcgaacgacgttctttacctttta
ccctgttatcagcagctggcgtctaacgttcaggcgctaggaaaagtgcactggatatat
gaagaagtggcgcttttggttgagaaaaagcgtgcgcaaatgccagaagattttgcttac
ttaagcattaagaatagctggcgtttaaacagtgaacagctcaccgtattgcaagcgctg
gcggcatggcgattaaacacggcgagaaagaaagacctagcgctgaactttgtattcaaa
gaaggacatttatttgaggctgcgcagcgactgatagacgacaagtctggcttatcacgg
ataaatggcgtaaatcatcagtcggttaggcgttatggcgacactatcgtaacgctgatt
gaagaggcaagagcaagatatgcgcagacgccggaaaaacttaggctgccaattgtacag
cggcttatcgatatagcgaaatataaaaagtaccttgctgaacttaaaaccataagcgaa
caaattgccaaagataacggcgtaaccacagatgttattgcgtctaaaaagcaacttaat
cagctgttgaagtggtattggttccctgtagatgagacgcgggtacagggcttgaaaccc
gatttactctccacgtggagagcgcctttgtttcgcccacatgtagcacgtttacttggc
gacgaaccgacacaataa
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