Alteromonas mediterranea U4: I607_16820
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Entry
I607_16820 CDS
T02720
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
amal
Alteromonas mediterranea U4
Pathway
amal03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
amal00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
I607_16820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amal03021
]
I607_16820
03400 DNA repair and recombination proteins [BR:
amal03400
]
I607_16820
Enzymes [BR:
amal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
I607_16820
Transcription machinery [BR:
amal03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
I607_16820
DNA repair and recombination proteins [BR:
amal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
I607_16820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
AGP87136
LinkDB
All DBs
Position
complement(3802528..3803514)
Genome browser
AA seq
328 aa
AA seq
DB search
MGSVTEFLKPRLVEIENVSPTRAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEI
DGVLHEYSTKEGVQEDVIEILLNLKGLAVRLEGKTEATLTLVKSGAGPVVAGDIQHDGDV
EIANPEHVICTLTGEAEISMRIKVEMGRGYVPASTRRSSEEDDRPIGRLLVDASYSPVER
IAYSVESARVEQRTDLDKLIIDMETNGTLDPEEAIRRSATILAEQLDAFVDLRDVSEPEA
KEEKPEFDPILLRPVDDLELTVRSANCLKAEAIQYIGDLVQRTEVELLKTPNLGKKSLTE
IKDVLASRGLSLGMRLENWPPESIAEKD
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
gtgggttctgtgactgaattcctaaaaccgagattagttgagatcgaaaacgtttctcct
actcgtgccaaagtaactttggaaccactagagcgcggctttggccatactctaggtaac
gccctacgtcgtattttactgtcatctatgccaggatgtgcagttaccgaggtagaaatt
gatggcgttcttcacgagtacagcaccaaagaaggtgtacaagaagacgttatcgaaatc
ttgctaaatcttaaaggtttagcggttcgccttgaaggtaaaactgaggcaaccctaact
ctagtgaaatctggcgctggccctgttgttgctggtgatattcagcatgatggcgacgta
gaaattgcaaaccctgagcatgttatttgtactctgactggcgaagctgaaatcagcatg
cgcatcaaagtagaaatgggccgtggttatgtaccagcttctacccgtcgctcctctgaa
gaagatgatcgtccaattggtcgtttgttagtagacgcttcatacagcccagttgaacgt
attgcttacagtgtagagtctgcacgtgttgaacaacgcacagacctagacaaactaatc
atcgacatggagacgaacggtactttggatcctgaagaagcgatccgccgttctgctact
atcctagctgaacagctagatgcattcgtagacctacgtgatgtatctgagccagaagcg
aaagaagagaagccagaattcgatccgattctgcttcgcccagtagatgacctagagcta
acagtacgttctgcaaactgtttgaaagcagaagctatccagtacattggtgacctggta
cagcgcactgaggttgagctacttaaaacgccaaaccttggtaagaaatcgctaactgaa
atcaaagatgttctagcatctcgtggtctttctctaggtatgcgcctagaaaactggccg
ccagagagcatcgctgaaaaagattaa
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