Alteromonas mediterranea U4: I607_20467
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Entry
I607_20467 CDS
T02720
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
amal
Alteromonas mediterranea U4
Pathway
amal03420
Nucleotide excision repair
amal03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
amal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
I607_20467
03430 Mismatch repair
I607_20467
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amal03400
]
I607_20467
Enzymes [BR:
amal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
I607_20467
DNA repair and recombination proteins [BR:
amal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
I607_20467
MMR (mismatch excision repair)
Other MMR factors
I607_20467
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
AAA_22
UvrD_C_2
Motif
Other DBs
NCBI-ProteinID:
AGP87824
LinkDB
All DBs
Position
unnamed:244072..246156
Genome browser
AA seq
694 aa
AA seq
DB search
MEFSEEQINFIVAPFDQHILLSAPPGGGKSKVTQARVAYMLSKGINPETMLITMFSRPAA
EEFRRDMQAYNIENQPRIRHYHQLGYRLCQSLEKRNLIPTRKLIEDENQWLGICRDNLRK
SIIEHGTSDINAYDQSVIDNFLSFVNFCKSDTLPAAEMFSRLKLPSDLQPFILGFELVEK
ERKRLKIRTLSDLIYDVAVALEYEEKIYKSIANKLDHIVIDEYQDIDPASMKIFHAMAGT
RAKFNCIGDDDQTIFEWRGSSPKTMTSDWDAVFPTSSKLHLTKTYRYGHELALAAYNCIS
RNSERTEKMCLSPLDANKTEINIGYYDEPAHGTPPYADTNQSSMIAAIKRFIEKGNSYSD
IAILPRMHSVTPFIEIALIKAGIPYSMHSKSTSIANTPLFKSIASTAALFAMEVSQKEKF
SLFAKSLTFPRLPVKREKYKDLFSLVFSEGAIDDESLLNIFPGSKPFFIKSINQRLNSLR
NSLSKESFQEFYDSYINTFLMPLVLSESTKGKSNIPKESPSLLDGFIEITKGATDYHQFN
RALRAIGSESSNKLGSISILSQHSAKGLTVKMAIIPACCETISPSIIPTKVTDLESERRV
FYVAATRPREELLLMLPPDREFIKLSETETNTAPASHQEDVNYVSRFVYEMNIPGAKRIS
HAIHEGAGGDLDKSPSKIEFNQYLSRLGSFARVK
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atggaattttcagaagaacagattaatttcattgtggccccttttgaccagcacattcta
ctaagtgctcctccaggtggtggtaaatcgaaagtgactcaagctagagtggcttatatg
ttgagtaaaggcatcaaccctgaaacgatgctaatcacaatgttcagtcgccctgcagcg
gaagagtttaggcgtgacatgcaagcctacaatatagaaaatcagccgcgcattaggcat
taccaccagcttggttaccgtctttgccagtcattagaaaaacgcaatttgatacctact
agaaaattaattgaagatgagaatcagtggttaggaatttgtagagataatttgcgaaaa
tcaatcattgagcatggtacttcggatataaatgcttatgaccagtctgttattgataac
tttctctcgttcgtaaatttttgcaaaagtgacacacttcctgccgcggaaatgttcagc
agattaaagctcccctccgacctacagccatttattttaggttttgagttagttgaaaaa
gagcggaaacgactaaaaatcaggacgttaagtgacttgatatatgacgttgcagtggca
ttagaatatgaggaaaagatctataaatctattgctaataaactcgatcatattgttatt
gatgagtaccaagacatagaccctgcctcaatgaaaatctttcatgctatggctggtaca
agagcaaaattcaattgcattggtgatgatgaccaaacaatttttgaatggaggggcagt
agccctaaaaccatgacttctgattgggacgccgtattccccacttcatccaagcttcac
ctaaccaagacatacaggtacggacatgagctcgctctcgccgcttacaactgtatttct
aggaattcggaaagaacagaaaaaatgtgtctttcgcctttggatgctaataaaaccgaa
ataaatattggttactacgatgagccggcgcacgggacgcccccatatgctgatactaat
cagtcctcaatgattgcagctattaagagatttatagagaaaggtaacagctactcagac
attgctattttaccgcgaatgcactctgtaacacctttcatcgaaattgctcttattaag
gcaggtatcccttattcaatgcactcaaagagtacttctatagcaaatacaccgctattt
aaatcaattgcgagtactgcggcgctgtttgctatggaagtaagtcaaaaagagaagttc
tcactatttgctaaatctttaactttcccacgactaccagttaaaagggaaaaatataag
gaccttttttcactagtgtttagtgagggagcaattgatgatgaatcattgctaaatata
ttcccaggctctaaacctttctttataaaaagcataaatcagcgcctcaatagccttaga
aactcactatcaaaagaatcatttcaagagttctacgactcatatattaacacattcttg
atgccactagttttgtctgaatcaactaaaggtaaatctaatatccctaaagagtcaccc
tcattgctagatgggtttatagaaattaccaaaggggcaactgattaccatcaattcaat
agagcgcttagagctataggtagtgagagctctaacaaactaggtagtatttctattctg
tcacagcattcagccaaagggctgactgtaaaaatggcaatcatacctgcttgttgcgaa
acaattagcccttcaatcatacctactaaggttaccgatttagagtctgaaaggcgcgtt
ttctacgttgctgctacccgtccgagagaagagttattgcttatgctgcctcctgataga
gagttcataaaactatctgagactgaaaccaatactgcaccggcctctcaccaagaagat
gtaaattatgtttcacgatttgtctatgaaatgaatattccaggcgcgaagcgcatatca
cacgccatccatgaaggagctggtggggatctcgacaagtcaccttctaaaatagaattc
aatcagtacctatctcgattaggttcattcgcaagagtaaaataa
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