Actinomyces marmotae: HPC72_04200
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Entry
HPC72_04200 CDS
T07249
Name
(GenBank) DEAD/DEAH box helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
amam
Actinomyces marmotae
Pathway
amam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPC72_04200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amam03019
]
HPC72_04200
03400 DNA repair and recombination proteins [BR:
amam03400
]
HPC72_04200
Enzymes [BR:
amam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HPC72_04200
Messenger RNA biogenesis [BR:
amam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HPC72_04200
DNA repair and recombination proteins [BR:
amam03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HPC72_04200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HTH_IclR
Pribosyltran
MGS
RecQ_Zn_bind
Motif
Other DBs
NCBI-ProteinID:
QKD79555
UniProt:
A0A6M8B9I3
LinkDB
All DBs
Position
complement(979804..982119)
Genome browser
AA seq
771 aa
AA seq
DB search
MSAPASSTPSSAPLAALRERAEAALRALVGSPDARLRPDQWRAIEALVVGRRRALVVERT
GWGKSAVYFVATTLLREGWGEWHEGGSLPPHGREGADGSGPTIIISPLLALMRDQVAAAE
RAGIRAVTMNSANSAQWGQVEDEIRAGRADVLLVSPERLNNPVFRDEVLPHLAASAGLVV
IDEAHCISDWGHDFRPDYRRIRTLLAGLPPRTPVLATTATANERVTTDVAEQLAGRQMGV
RAPEALVLRGSLQRDSLRLGVARLEDSATRLAWLTDYLQRTQGSGIVYCLTISAAGETAQ
ALRAAGLEVATYTGQTEPAERERLEADLKANRVRALVATSALGMGFDKPDLGFVIHMGAP
ASPVAYYQQVGRAGRGVDRAEAILLPGAEDRAIWDWFGSQGFPPPERVHEVLDALQAADG
PLGIGALETVTSLRRARLESMLKVLDVDGAVRRVRGGWLATGEPWAYDAERYARVEEARR
SEQEAMLAYERLRAPECRMAFLRAALDDPEMPEGWRCGACDLCGGLTLPQGPDPQRVGAA
RESLERVGVEVPARRQWPVGMERLGLGALRGRIPPERRAGTGIAVGRLDGLGISSALRGL
FDSGEDGLVPPGLRAPVLEATDRLAALARAEGGADGASAGGASAPEGRGGAEGTEGIIDA
VVIIDSHRRPRLIRHLGGAVAHRLGAERLGVIATGGQPGRHDVNSATRLATVARSLSLDG
WGPDALRRLDGARIALVDDSTDSGWTLTVAADLLRGSGAAAVHPLVLAQGS
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atgagcgccccagcatcgtccacgccatcgtcggcacccctggccgcgctgcgcgagcgc
gcggaggccgcgctgcgcgcgctcgtcggcagcccggacgcgcggctgcgccccgatcag
tggcgggcgatcgaggcgctggtggtaggccgccgccgagccctcgtggtggagaggacg
ggatggggtaagtccgccgtctacttcgtggccaccacgctgctgcgcgagggctggggc
gagtggcacgagggaggctccctcccaccccacgggcgggagggagcggacggctccggg
cccacgatcatcatctccccactattggccctcatgcgcgaccaggtcgccgccgccgag
cgcgccggcatccgcgccgtcaccatgaactcggccaacagcgcccagtggggccaggtc
gaggatgagatccgcgccgggcgcgccgacgtcctcctggtctcgcccgagcgcctcaac
aaccccgtgttccgggatgaggtccttccgcatctggcagccagcgcgggcctcgtcgtc
atcgatgaggcgcactgcatctcggactgggggcatgatttccggccggactaccggcgc
atccgcaccctgctcgccggcctgcctccccgcacccccgtcctggcgacgacggccacg
gccaacgagcgcgtgaccacggatgtggccgagcagttggccgggcggcagatgggcgtc
cgggccccggaggcgctcgtgctgcgcgggagcctgcagcgggactccctgcgcttgggc
gtggcgcgcctggaggactcggccacgcgcttggcgtggctcaccgactacctccagcgc
acccagggctccgggatcgtctactgcctcaccatctccgcggcgggtgagaccgcccag
gccctgcgtgccgccggcctggaggtggccacctacaccggccagaccgagcccgcggag
cgcgagcgcctcgaagccgatctcaaggccaaccgcgtgcgggcgctcgtggccaccagc
gccctgggcatgggattcgacaagcccgacctcggattcgtcatccacatgggcgcgccc
gcctcgcccgtggcctactaccagcaggtgggccgcgcggggcgcggcgtcgacagggcg
gaggcgatcctgcttcccggcgcggaggatcgggcgatctgggactggttcggctcccag
ggcttcccgccgcccgagcgggtccacgaggtgctcgacgcccttcaggcggccgatggc
cccctggggatcggcgcgctggagacggtgacgagcctgcggcgcgcccgcctggagtcg
atgctcaaagtgctcgacgtcgacggcgccgtgcgcagggtcaggggcggttggctggcc
acgggcgagccctgggcgtacgacgccgagcgctacgcccgggtggaggaggccaggcgg
tccgagcaggaggcgatgctcgcctatgagcgccttcgcgcccccgagtgccgaatggcc
ttcctgcgagccgcgctcgatgacccggagatgcccgagggctggcgctgcggcgcctgc
gacctgtgcgggggcctcaccctcccccaggggccggatccgcagcgggtgggggcggcg
cgggagtcgttggagcgcgtcggggtcgaggtccccgcccggcgccagtggcccgtgggc
atggagaggctggggctgggcgccctgcggggcaggatcccgcctgagcggcgggcgggc
acgggcatcgccgtcggcaggcttgacggcctgggcatctcgtcggcgctgcgcgggctc
ttcgactccggggaggacgggctcgtccctcccgggctgcgggcccccgtgctggaggca
acggaccgcctggccgctctggcccgcgccgagggcggggccgacggcgcctccgcgggc
ggcgcgagcgcacctgaggggcggggcggcgcggagggcaccgaggggatcatcgacgcc
gtcgtcatcatcgactcccaccgccgcccacggctgatccgccacctgggaggggcggtc
gcccaccgcctgggcgccgagcgcctgggcgtcatcgccactggcgggcagccggggcgc
catgacgtcaactccgcgacccgcctggcgacggtggcccggagcctgagcctcgacggc
tgggggcccgacgccctgaggcgcctcgacggcgccaggatcgcccttgtcgacgactca
acggactccggatggaccctcacggtcgcggcggatctcctgcggggctcgggcgccgcg
gcggtccaccccctcgtgctcgcccaggggtcctag
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