Actinomyces marmotae: HPC72_05530
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Entry
HPC72_05530 CDS
T07249
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
amam
Actinomyces marmotae
Pathway
amam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPC72_05530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amam03019
]
HPC72_05530
03009 Ribosome biogenesis [BR:
amam03009
]
HPC72_05530
Enzymes [BR:
amam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HPC72_05530
Messenger RNA biogenesis [BR:
amam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HPC72_05530
Ribosome biogenesis [BR:
amam03009
]
Prokaryotic type
rRNA helicases
HPC72_05530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
CMS1
ResIII
Collagen
DUF6892
Motif
Other DBs
NCBI-ProteinID:
QKD79779
UniProt:
A0A6M8AZ23
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All DBs
Position
1312505..1315033
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AA seq
842 aa
AA seq
DB search
MTTQNPSASDEHGPLSLDDLFSASEEGVASPAAARARAHGTTISALSAGSSASAPSFDTP
ASSDTPEDPEDVEHEDEEDDVDRALPEADPEDDAPDEAEHADDGADIDEEEVDGHAPFDP
TDDDDEDEDSARDDAGAPAEATFSDLGLPADLLKAVTDMGFTTPTPIQREAIPVLLGGRD
VVGVAQTGTGKTAAFGLPLLDAVDSRNGTVQALVLAPTRELAIQSADAITDMAQRSRGLD
VVAVYGGAPYGPQIGALNSGAQVVVGTPGRIIDLIEKGALALDAVKYFVLDEADEMLRMG
FAEDVETIAASLPSGRRTALFSATMPPAIERVAAEHLVDPARIEVSRQSSTVDTVHQTYA
VVPFRHKIGAVSRVLAVTEAEAAIVFVRTKSTAEDVAIELAGRGIQAAAISGDVPQRERE
RLVERLRAGALDVLVATDVAARGLDVDRIGLVVNFDVPREAEAYVHRIGRTGRAGRHGEA
VTFLTPKEKSKLRQIERLTGTRLEEITLPSPADVSAHRARKLLAKAAARHERGRLGMYAP
LIADTTAELDIDAEGLAAILLALAVGDEGPQRRHDDDRPRRGRERREVSVDDEGAFVSAS
FEGGRENRRRERPEGRQGAARGGRREHEGPGTVYRIEVGHRDRVMPGAIVGALANEGGIE
GSDIGKIDILQSFSLVTIYADLSPEQLSVMGRATFAGRELRIRPDEGPGHGWSSPNDRGR
RGERDDHGFRGGRGERGGHRWEDRGERGERGDRGDRGDRGFRGRYEDRRGGYRDDRGGRR
WEDRGARRWEDRGGRDSGFRDDRGYRSGRDDRGGNRFGGNRGGGYRGNRDNRGPWGSRRD
DS
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atgaccactcagaacccgtccgcctccgacgagcacgggcccctcagcctcgacgacctc
ttcagcgcctccgaggagggggtcgcctcacccgccgcggcgcgcgcccgtgctcacggc
acgactatctcagcactgtccgccggctcgtccgcatcagcgccctccttcgacaccccg
gcctcctccgacacgcccgaggaccccgaggatgtcgagcacgaggatgaggaggacgac
gtcgaccgcgccctgcccgaggccgaccccgaggacgacgcgcccgacgaggccgagcac
gctgacgacggcgccgacatcgacgaggaggaggtcgacggccacgcgcccttcgatccc
accgacgacgatgacgaggacgaggactccgcccgcgacgatgccggcgcgccggccgag
gccaccttctccgatctcggcctgcccgccgacctgctcaaggccgtcaccgacatgggc
ttcaccacccccacccccatccagcgcgaggccatccccgtgctgctcggtgggcgcgac
gtcgtcggcgtcgcccagaccggcaccggcaagaccgccgccttcggcctgcccctgctc
gacgccgtcgactcgcgcaacggcacggtccaggcgctcgtcctggcccccacccgcgag
ctggccatccagagcgccgacgccatcaccgacatggcccagcgctcgcgcggcctcgac
gtcgtcgccgtctacggcggcgccccctacggcccccagatcggcgctctcaactccggc
gcgcaggtcgtcgttggcacgccgggccgcatcatcgacctcatcgagaagggcgcgctc
gccctggacgcggtgaagtacttcgtcctcgacgaggccgacgagatgctgcgcatgggc
ttcgccgaggacgtggagaccatcgccgcctccctgccctccgggcgccgcaccgcgctg
ttctccgccaccatgccgcccgccatcgagcgggtggccgccgagcacctcgtcgacccc
gcgcgcatcgaggtctcccgccagtcctccaccgtcgatacggttcaccagacctacgcg
gtggtccccttccgccacaagatcggcgcggtgtcccgcgtcctcgcggtcaccgaggcg
gaggccgccatcgtcttcgtgcgcaccaagtccaccgccgaggatgtcgccatcgaactg
gccgggcggggcatccaggccgccgcgatctccggtgacgtcccccagcgcgagcgcgag
cggctcgtcgagcgactgcgcgccggcgccctggacgtcctcgtcgccactgacgtcgcg
gcccgcgggctggacgtggaccgcatcgggctcgtcgtcaacttcgatgtgccccgtgag
gccgaggcctacgtccaccgcatcgggcgcaccggccgcgccggccgccacggcgaggcc
gtcaccttcctgacccccaaggagaagagcaagctccgccagatcgagcgcctgaccggc
acgcgcctggaggagatcaccctgccctcccccgccgacgtctccgcgcaccgcgcccgc
aagctcctggccaaggccgccgcccgccacgagcgcggccgcctgggcatgtacgccccg
ctcatcgccgacaccaccgccgaactggacatcgacgccgaggggctcgccgccatcctg
ctcgccctcgcggtgggcgacgagggaccgcagcgccgccacgacgacgaccgcccgcgc
cggggccgtgagcggcgcgaggtgagcgtcgacgacgagggcgccttcgtctcggccagt
ttcgaggggggccgcgagaaccggcgtcgcgagcgtcccgagggcaggcagggcgccgcg
cgcggcgggcgccgcgagcacgagggccccggcaccgtctaccggatcgaggtcggccat
cgcgaccgggtcatgcccggcgcgatcgtgggcgccctggccaacgagggcgggattgaa
ggctcggacatcggcaagatcgacatcctccagtccttctccctcgtcaccatctacgcc
gacctgagccccgagcagctctccgtcatgggccgcgcgaccttcgccggccgtgagctg
cgcatccgccccgatgagggcccgggccacggctggtccagccccaatgaccgcggccga
cgcggggagcgggacgatcacggcttccgcggcggtcggggcgagcgcggcgggcaccgc
tgggaggaccgcggcgagcgcggcgagcgcggcgatcgcggcgatcgcggcgatcgcggc
ttccgcggccgctacgaagaccgccgcggcgggtaccgggacgatcgtggcggccgtcgt
tgggaggaccgcggcgcccgtcgttgggaggaccgtggcggccgtgactcgggcttccgg
gacgaccgcggctaccgctccgggcgcgacgaccgcgggggcaaccgcttcgggggcaac
cgcggcggcggctaccgtgggaaccgcgacaaccgggggccctggggctcgcggcgcgat
gactcctga
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