Actinomyces marmotae: HPC72_06465
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Entry
HPC72_06465 CDS
T07249
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
amam
Actinomyces marmotae
Pathway
amam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPC72_06465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amam03019
]
HPC72_06465
03009 Ribosome biogenesis [BR:
amam03009
]
HPC72_06465
Enzymes [BR:
amam01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HPC72_06465
Messenger RNA biogenesis [BR:
amam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HPC72_06465
Ribosome biogenesis [BR:
amam03009
]
Prokaryotic type
rRNA processing factors
HPC72_06465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
QKD79924
UniProt:
A0A6M8B084
LinkDB
All DBs
Position
complement(1526719..1529325)
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AA seq
868 aa
AA seq
DB search
MPRAKKTNEAATEAVEPMSAVEPEEAPAAPARRRRKATAAAAAPQAAPESRAEKSPRRAP
EADRAGAREAEPDGASQDDQPMLPVASLLFQAPDPARARRRRRATSATTTPQEAPAIEQP
AARGRGADDDAAQTDGPQDPDAASEDAAAPAGKGRRRRRATAPASAPEHVEETAPAGRRS
RKKKAADALPEADSPEPQDAPIPAEDEAADSPDGANEADAADDASEAESGQGRRKRRRGG
RGRRSRAQSAEDGSSDDAPGAEGADDGEPDGRAVGAPVGAAEDSDGAQSEEGGGSSRRRR
RRSRTRSDREAREGRGRDVRDEVTALKGSTRLEAKRQRRREGRAAGRRRPIVTEAEFLAR
RESVDRRMIVREQDGLNQIAVLEDGLLVEHYVARHTQASMVGNIYIGRVQNVLPSMEAAF
VDLGKGRNAVLYAGEVNWDAAGMEGKPRRIEDALSSGDTVLVQVTKDPIGHKGARLTSQI
TLAGRYLVLVPGGTMTGISRKLPDTERARLKKILKRVVPDSAGVIVRTAAEGASEEQLAA
DVKRLADQWASIDKRAKAVLGGSGKAPVLLKGEPELALRVVRDVFNEDFGQLVVAGRDAW
RTISEYVTELSPDLADRLQHWVEPEDVFTAHRIDEQLAKGFDRKVWLPSGGTLVIDRTEA
MTVIDVNTGRYTGAGGTLEETVTRNNLEAAEEIVRQLRLRDIGGMVVIDFVDMVLESNRD
LVLRRLVECLGRDRTRHQVTEVTSLGLVQMTRKRVGQGLVEAFSTTCDCCGGRGFIVHES
PVENQQADLSASGSRSSGRKGRKGKDGSAKPSERASGKTSANRSDQAEDAGDDEAARAAV
RGALAQIAAAAEQAHEQSQDASPQSDGD
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
atgccacgagccaagaagaccaacgaagccgccaccgaggccgtcgagcccatgagcgcc
gtcgagcccgaggaggcccccgccgcgccggcgcgccggcgccgcaaggcgaccgccgct
gctgcggccccccaggccgcgcccgagtcccgggcggagaagagcccccggcgcgccccg
gaggccgacagggccggggctcgcgaggccgagccggacggcgcctcgcaggacgaccag
cccatgctgcccgtcgcctccctgctcttccaggcgcccgaccccgcccgcgccaggcgt
cgccgccgggccacctcggccacgacgaccccgcaggaggcgcccgccattgagcagccc
gccgcccgcgggcggggcgccgatgatgatgccgcccagaccgacgggccgcaggacccc
gatgccgcctccgaggacgccgccgcgcccgcggggaaggggcgccgccgccgcagggcg
acggccccggcctccgcgcccgagcacgtggaggagaccgcgccggccgggcgccgctcg
cgcaagaagaaggcggcggacgccctcccggaggccgactcccctgaaccccaggacgcc
ccgatccccgccgaggatgaggccgccgactcccccgacggcgcgaacgaggcggatgcc
gccgatgacgcctcggaggccgagtcgggtcagggtaggcgcaagcgccgccgcgggggc
cgggggcggcgctcccgtgcgcagtccgccgaggacggctccagcgatgacgcccccggc
gctgagggcgctgacgacggcgagcccgatggccgggccgtgggtgcgccggtgggggca
gcggaggactccgacggcgctcagagcgaggagggtggcggctcctcgcgccgccgtcgt
cgccgctcgcgcacccgctccgaccgcgaggccagggagggccggggcagggacgtccgc
gatgaggtcaccgccctcaagggttccacgcgcctggaggccaagcgccagcgccgccgg
gagggccgcgccgccggccgccggcgcccgatcgtcaccgaggccgagttcctggcccgg
cgcgagagcgtcgaccggcgcatgatcgtgcgcgagcaggatgggctcaaccagatcgcg
gtgctggaggacggcctgctcgtcgagcactacgtcgcccgccacacgcaggcctcgatg
gtcgggaacatctacatcggccgcgtgcagaacgtcctgccctcgatggaggccgccttc
gtcgacctcggcaagggccgcaacgcggttctctacgccggcgaggtgaactgggatgcc
gcgggcatggagggcaagccccgccggatcgaggacgccctctccagcggagacaccgtc
ctcgttcaggtcaccaaggaccccatcggccacaagggggcgcgcctgaccagccagatc
accctggcgggccgctacctcgtgctcgtgccgggcggcacgatgaccggcatctcgcgc
aagctgcccgacaccgagcgggcccgcctgaagaagatcctcaagcgggtcgtccccgac
tccgccggcgtcatcgtgcgaaccgccgccgagggtgcctcggaggagcagctcgccgct
gacgtcaagcgcctcgcggaccagtgggcctcgatcgacaagcgcgccaaggccgtcctg
ggcggctcggggaaggccccggtcctcctcaagggcgagccggagctcgcgctgcgggtc
gtgcgcgatgtcttcaatgaggacttcggccagctcgtcgtggcgggacgggatgcctgg
cgcaccatctccgagtacgtcaccgagctcagccccgatctcgccgatcgcctccagcac
tgggtggagccggaggacgtgttcaccgcccatcgcatcgacgagcagctcgccaagggc
ttcgaccgcaaggtctggctgcccagcggcggcactctcgtcatcgaccgtacggaggcc
atgaccgtcatcgatgtcaacaccggccgctacaccggcgccggcggcaccctggaggag
acggtcacccgcaacaaccttgaggcggccgaggagatcgtccgccagctgcgcctgcgg
gacatcggcggcatggtcgtcatcgacttcgtcgacatggtcctggagtccaaccgcgac
ctcgtcctgcgccgcctcgtggagtgcctgggccgggaccgcacccgtcaccaggtcact
gaggtcacctccctcggcctggtgcagatgacgcgcaagcgcgtcggccagggactggtc
gaggccttctccaccacctgtgactgctgcgggggccggggcttcatcgtccatgagagc
cccgtcgagaaccagcaggccgacctgtccgcctcggggtcccgctcatcgggtcgcaag
gggcgcaagggtaaggatggctcggcgaagccctccgagcgcgcctcgggcaagaccagc
gccaaccgctccgatcaggcggaggacgccggcgacgacgaggcggcgcgcgccgccgtc
cgcggggccctcgctcagatcgccgccgccgccgagcaagcgcacgagcagtcgcaggac
gcctccccgcaatccgacggcgactga
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