KEGG   Acidianus manzaensis: B6F84_07660
Entry
B6F84_07660       CDS       T04836                                 
Name
(GenBank) exosome complex component Rrp42
  KO
K12589  exosome complex component RRP42
Organism
aman  Acidianus manzaensis
Pathway
aman03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:aman00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    B6F84_07660
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aman03019]
    B6F84_07660
Messenger RNA biogenesis [BR:aman03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     B6F84_07660
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     B6F84_07660
SSDB
Motif
Pfam: RNase_PH RNase_PH_C MaoC_dehydratas
Other DBs
NCBI-ProteinID: ARM75915
UniProt: A0A1W6K0A5
LinkDB
Position
1563832..1564662
AA seq 276 aa
MSITPSNENIIPLIKKESILASLDRGIRLNGRKLNEYRQLSIILDYAKKADGSALVKLGD
TGVLAGVKIEAEEPFEDTPNQGNLVVNVELLPLAYETFEPGPPDENSIELSRVVDRSLRD
SKSIDLTKLVIEPGKKVWTVWVDIYVLDYGGNILDASTIAAIAALYNARFPKVVKENDEI
KIIREEKGDKLPMNYPVVTVSVAKIGNHFVVDPDLDEEGIMDAKISFSYTPDGRIVGMQK
SGTGSFTFDEIDQVENLARASSQKILEELKKQLNIQ
NT seq 831 nt   +upstreamnt  +downstreamnt
atgtcaattaccccatctaacgaaaatataatacctttgataaagaaggaaagtatttta
gcatcattagatcgtggaattaggctaaatggaagaaaacttaacgagtataggcagtta
tctataattttagattatgctaaaaaggcagatggttctgcattagtaaagcttggagat
actggtgtcttagctggagtaaaaatagaagcggaagagccatttgaagatactccaaat
caaggaaatctagtagttaatgtcgaattattaccattggcatatgaaacatttgaaccg
ggccctccagatgagaattctatagaattatcaagagttgtagatagaagcttaagagat
tctaagtcaatagatttaactaaattagttatagagccaggaaaaaaagtatggactgta
tgggttgatatatatgttttagactatggtggaaacatactagacgcttctacaatcgct
gctatagcagcactttataatgcaagatttcctaaagtggtaaaagaaaatgatgaaata
aaaataattagagaagagaaaggagataaacttcctatgaactatccagtagttacagtc
tcagtagcgaaaataggcaatcattttgttgtagatccagatctagatgaagaaggtata
atggacgccaagatttcattttcatatactcctgatggaagaatagtaggtatgcaaaag
tctggtactggttcatttacatttgatgaaattgatcaggtcgagaatctagccagggca
tcaagtcaaaaaatattagaagaacttaaaaagcaattaaatatacaataa

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