Alteromonas mediterranea U8: I634_02795
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Entry
I634_02795 CDS
T02722
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
amao
Alteromonas mediterranea U8
Pathway
amao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I634_02795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amao03019
]
I634_02795
Enzymes [BR:
amao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
I634_02795
Messenger RNA biogenesis [BR:
amao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
I634_02795
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
AGP92301
LinkDB
All DBs
Position
complement(661574..662863)
Genome browser
AA seq
429 aa
AA seq
DB search
MPTHLTDTHFSDLPINGKVVDALAAANFSHCTPIQALALPPLLEGHDIAGQAQTGTGKTI
AFLVATFHYLLSKAENVDNSKSNGPRAIIMAPTRELAVQIYNDAKLLSEHTGLSLGLIYG
GEGYQSQRETLEEGVDIIIGTTGRILDYYKQNVFSLKNIQVAVLDEADRMFDLGFIKDIR
FLFRRMPPAGERLSMLFSATLSYRVQELAYEHMNNPTHVQVAPEQTTATRVSQELFYPSD
DDKMLLLLTLLEEEWPEKAIVFANTKHSCEKVTDWLTADGHRVGLLSGDVPQKKRLGILE
DFTKGKLDVLVATDVAARGLHIDAVTHVFNYDLPDDAEDYVHRIGRTGRAGQSGIAISFA
CEKYALNLPAIEQYIQNAIPVTDYDSGALLDDVTPPKPRRRRTPNNRNSARRGNGRGRGK
PQQRNNRAQ
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgcctactcacttaactgatactcatttttccgacctgccgattaacggcaaggttgtt
gacgcgttagcggcagctaatttttcacattgtacaccaattcaagcacttgcactgcct
cctttattggaaggtcacgacattgcaggtcaggctcaaactggaaccggtaaaaccatt
gcctttttggtggctacatttcactatttgctaagcaaagcagaaaatgtagataacagc
aaatcaaatggcccacgcgctattattatggcgccaaccagagaactcgccgttcaaatt
tacaacgacgccaaactgctcagtgagcataccggattgtcgcttggtttgatttatggg
ggcgaaggataccaaagtcaacgtgaaactttggaagaaggggtggatattataattggt
acgacggggcgcattctggactattacaaacagaacgtgtttagcctgaaaaacattcag
gttgccgtacttgatgaagctgatcgtatgttcgacttaggctttattaaagatatccgc
tttttattccgccgtatgccacctgccggtgagcgtttgagcatgttgttctctgcaacc
ctgagctatcgcgttcaggaactggcctatgagcacatgaataatccaacccacgttcag
gtagcccccgagcaaacaactgccacacgcgtttctcaggagctcttctatccgtctgat
gatgacaagatgctgctgcttcttacgctacttgaagaagagtggcctgaaaaagccatc
gtcttcgccaataccaagcacagctgtgagaaagtcactgattggttaaccgcagacggc
catcgcgttggcttactaagtggcgatgtaccacaaaagaaacgccttggaattttagaa
gacttcaccaaaggtaagttagatgttctggtagcgacagacgttgctgctagaggtcta
cacattgatgcggtgacacacgtgttcaattatgacctacccgatgatgcggaagactac
gtgcatcgtattggtcgtactggtcgtgccggacaaagtggtattgcaattagttttgct
tgcgaaaaatacgcactaaacttacctgctattgagcaatacattcaaaacgccattcct
gtcaccgattatgacagcggcgcgcttcttgatgatgtaacgcctcctaaaccacgcaga
agacgtacgcctaacaatcgcaatagtgcgcgccgtggtaacggtagagggcgtggcaag
cctcagcaacgcaacaacagagcgcaataa
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