Alteromonas mediterranea U8: I634_04680
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Entry
I634_04680 CDS
T02722
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
amao
Alteromonas mediterranea U8
Brite
KEGG Orthology (KO) [BR:
amao00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
amao03009
]
I634_04680
Enzymes [BR:
amao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
I634_04680
Ribosome biogenesis [BR:
amao03009
]
Prokaryotic type
rRNA helicases
I634_04680
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
ERCC3_RAD25_C
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AGP92666
LinkDB
All DBs
Position
complement(1078166..1079392)
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AA seq
408 aa
AA seq
DB search
MTFEELELDDALCHAAADMGFEAPTNIQELVIPHALDGRDILASAPTGTGKTAAFLLPAC
QFLLDYPRKQPGATRILILTPTRELALQVYEQAVAITKHTQLVCGVITGGINYGTDKETL
SKNLDILVATPGRLLEHIEKEAADCRDIECLILDEADRMLDMGFSTVVNQIAAEARWRKQ
NLLFSATLEGKGVKTFAHDILNNPEIVEANPSRKEKNKIHQWYHLADDMNHKQALLVNIL
KQETTTSAVVFVKTRDRLQMLKDFLASQDIQVCWLQGEMPQDKRNAAMARFKNGEVPILL
ATDVAARGIDVPNVSHVINFDMPRKADIYVHRIGRTGRAGAKGTAISLVEAHDFEMVTKA
ARYMGEPLKARVIDELRPKNKTPKIGPKKKKVKAKDKTKAKAKPKKKK
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgactttcgaagaactcgaattagacgatgcgctgtgtcacgcagcagcagatatgggg
tttgaagctccaactaacattcaagaattggtgatcccacacgcgctagacggccgagat
attttagcgtctgcgccaactggtacaggtaaaaccgctgcattcttattgccagcctgt
cagtttttactcgactacccgcgcaaacagccgggtgcgacacgtattttgatcttaacg
ccaacccgcgaactggctttgcaggtttacgagcaagcggttgccattaccaagcacacc
cagcttgtgtgtggagtaattactggcggtattaactacggcacagataaagagacgctt
agcaagaacttagatattcttgtcgccacaccaggccgtcttcttgaacacattgaaaaa
gaagcggcagactgtcgcgatattgaatgtttaattcttgatgaagccgaccgtatgctg
gatatgggcttctcgactgtggtgaaccaaattgcggcggaagcgcgctggcgcaagcag
aacctgctgttctcggccacccttgaaggtaaaggtgttaagaccttcgctcacgacatt
cttaataaccctgaaattgttgaagcaaacccgtcacgcaaagagaagaataaaattcac
cagtggtatcaccttgctgatgacatgaaccacaagcaagctcttctggtgaacatattg
aagcaggaaactacaacatcggcggtggtatttgtaaaaacccgcgaccgcctgcaaatg
ctaaaagactttctagcttcacaagatattcaggtgtgctggttacaaggtgaaatgccg
caggacaaacgcaacgccgctatggcccgctttaaaaatggcgaagtccctattttgtta
gcgactgatgtagctgcccgtggcattgacgtgccaaacgtcagtcatgttattaacttt
gatatgccgcgcaaagccgatatttacgttcaccgtattggtagaaccggccgcgcaggc
gctaaaggcacggctatttcactggttgaagcacacgactttgaaatggtaaccaaagca
gcgcgttacatgggcgagcctttaaaagcccgtgttatcgacgagctacgccctaaaaac
aaaacgcctaaaattggcccgaaaaagaaaaaagtgaaggccaaagataaaactaaggcg
aaagccaagcctaagaagaaaaagtaa
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