Anopheles maculipalpis: 126556823
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Entry
126556823 CDS
T10890
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
amap Anopheles maculipalpis
Pathway
amap03013
Nucleocytoplasmic transport
amap03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
amap00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
126556823
03015 mRNA surveillance pathway
126556823
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amap03019
]
126556823
Enzymes [BR:
amap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
126556823
5.6.2.5 RNA 5'-3' helicase
126556823
Messenger RNA biogenesis [BR:
amap03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
126556823
mRNA cycle factors
Common to processing body (P body) and stress granule
126556823
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_19
AAA_30
ResIII
SLFN-g3_helicase
NPHP3_N
DEAD
NAT10_TcmA_helicase
nSTAND3
AAA_32
AAA_16
AAA_22
AAA_5
SRP54
AAA_10
Motif
Other DBs
NCBI-GeneID:
126556823
NCBI-ProteinID:
XP_050068299
LinkDB
All DBs
Position
2RL:complement(662190..665943)
Genome browser
AA seq
1163 aa
AA seq
DB search
MSVDAYDGTTGSQSLTFVDTEENFFVGADSQGTEYDFRDFTIPSQSQTQASQLDHLGGSS
QVNGFGRRIGVDPTKLSGITSAIGELQFEEDEDEIDPVENKDLPPHACRYCGIHEPSTVV
MCNICKKWFCNGRGSTSGSHIVNHLVRAKHREVTLHADGPLGETVLECYSCAVRNVFVLG
FIPAKSDSVVVLLCRQPCAAQNSIKDMNWDQEQWKPLIADRCFLFWLVKIPTEQDQLRAR
KVSAAQINKLEELWKENVDATFQDLEKPGIDKEPQQVQLRYVDGYQYQNTFGPLVKLEAD
YDEKLKESQTQENIEIRWDTGLNKKTIAYFTLAKNDGDMKLMHGDELKLRYVGELHKPWS
CIGHVIKVPDNYGDDVGLELKHNHQAPVERTSNFSVDFIWKGTSFERMQQALRKFAMDAK
SVSNYIYTRLLGNVRADGAEEVLFRLNLPKHFSAPNLPDLNRSQVYAVRHALQRPLSLIQ
GPPGTGKTVTSATIVYHLTRLNGGPILVCAPSNTAVDQLTEKIHRTNLKVVRVCARSREA
IDSPVSFLAMHNQIRNMAQNSELKKLQQLKDETGELSLSDERRYRSLKKQAERELLEASD
VICCTCVGAGDLRLQRIKFNSILIDESMQSTEPECMVPVVLGAKQLILVGDHCQLGPVVM
CKKAAKAGLSQSLFERLVALGIRPFRLEVQYRMHPELSQFPSNFFYEGSLQNGVCADERK
LKVDFPWPSPDCPMFFLVTQGQEEIAGSGTSYLNRTEASNVEKITTRFLKAGIKPEQIGI
ITPYEGQRAYLVQYMQYQGSLHSKLYQEIEIASVDAFQGREKDIIIMSCVRANEHQGIGF
LNDPRRLNVALTRAKYGIIIVGNPKVLSKQELWNHLLNFYKDKKVLVEGSLNNLKESMIQ
FTKPKKIINTLNPGSHFMTNAMYDSKEVLGGGYFDRNPGPSTSYANNPLAGYGSGNSYHQ
QGGFMDITSHGSSSASANTPLDAFMRKVHDPIGYISPQRSHPAVSNMPVPVGMFINMSSA
PSRFYQQQQQAAIQAAKQTRRPVVGKTASQLLAAGSGSTSVGAKSSRPRPIGPPSSSSSS
INSGINHGSNMAGTSLTQGMSQNMSQPGFSLSQQAEFSQDYMGDYQSQMDNILSQESNYH
SQSGPGDRLAFELHSSSQFSQPY
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgacgcttacgacggaacgactggttcccaatcgctgacctttgtcgataca
gaggagaacttcttcgtaggtgcagattcgcagggcacggagtatgattttcgtgacttt
actattccgtcgcaaagtcaaacccaagcctcgcagctcgatcatcttggcggaagcagc
caggtgaacggattcggtcgtcgcattggcgtagatccgacgaagctatccggaattact
tccgccatcggcgaactgcagttcgaggaggatgaggacgagattgatccggtggagaat
aaggacttgcctccgcatgcgtgccgctactgcggtatacacgaaccgagcaccgtggtt
atgtgcaacatttgcaaaaaatggttctgtaatggccgtggaagcacgtctgggtcgcac
atcgtgaatcatcttgtccgtgccaagcatcgggaggttacgctgcacgctgacggccca
ctcggagagacggtgcttgagtgttactcttgtgccgtacgcaacgtatttgtcctcgga
ttcattcccgctaaaagtgactccgtcgtagtgctgctgtgcagacaaccgtgtgccgca
cagaactccatcaaggacatgaactgggaccaggaacaatggaaaccgcttatcgccgat
cgttgcttcttgttttggttggtgaagattccaacggagcaggatcagctgcgtgcgcgc
aaagtgtccgctgctcaaatcaataagctggaagagctgtggaaggaaaatgttgacgca
acgttccaggatttggagaagccaggcattgacaaggaaccgcaacaggtacagttgcgg
tacgtcgacgggtatcagtaccagaacacattcgggccgctggtgaaactggaagcggat
tatgatgaaaagctgaaggaaagccaaactcaggaaaacattgaaatccgatgggacact
gggctgaacaagaaaacgatcgcgtactttacgctcgccaagaacgacggcgatatgaag
ctgatgcatggcgatgaactgaagctgcgctacgtcggagagcttcacaaaccttggagc
tgcattgggcatgtgatcaaggtgccggacaactatggtgacgatgtgggcttggagctg
aaacataatcatcaagcgccggtagagcggaccagtaacttctcggtagatttcatctgg
aagggaacgtcgttcgagcggatgcagcaagctctacgcaagtttgctatggatgcgaaa
agtgtttcgaactatatttacacacgcttgcttggaaacgtgcgtgctgatggtgctgag
gaggttctgtttcggttgaatctacccaaacatttcagtgccccgaaccttcccgatctg
aatcggtcccaggtgtacgcagtccgtcatgcattgcagcgcccgcttagtctcatccaa
ggaccgcccggaactggtaagacagtcacttcggctacgatcgtgtaccacctgacgcgt
ctaaacggcggaccaattttggtgtgcgctccgagcaacactgccgttgatcagctgacg
gaaaagattcaccgcacgaatctgaaagtggtgcgcgtgtgtgcacgatcccgcgaagcg
atcgactcgcccgtcagttttctggcgatgcacaatcaaattcgcaacatggcgcagaat
tcggagttgaaaaaattgcaacaactaaaagatgaaactggcgagctaagtctttcggat
gagcgacgctatcgatcgctgaaaaagcaggccgaacgggaacttctggaagcgtccgac
gtgatttgctgtacctgtgttggtgcaggcgatcttcgtttgcagcgcattaaatttaat
tcaattttgatcgatgaatcgatgcagtcgaccgaaccggagtgtatggtaccggtggtg
ctgggtgccaaacagcttatcctcgtgggagatcactgtcagctcggcccggtggtgatg
tgcaaaaaggcggccaaagctggattgtcgcagagtttgttcgaacggctggtggcgcta
ggcattcgtccattccgactagaggtgcagtacagaatgcatccagagctgtcccaattt
ccgtcgaacttcttttacgagggcagccttcagaatggtgtatgcgcggacgaacggaag
ctgaaagtagatttcccttggccttcgccagattgtcctatgtttttcctcgtcactcag
gggcaggaggaaatcgccggatctggcacgtcgtacctaaatcgtacggaggcatcgaat
gtggagaaaataacgacccgctttctgaaggctggtattaaaccagagcaaattggaatc
attacaccgtatgaaggacagcgcgcgtacctggtccagtacatgcagtaccagggttcc
ctccactcgaagctgtaccaggaaatcgagatagccagtgtggatgcgttccagggtcga
gagaaggacatcattatcatgtcctgtgtgcgtgcaaatgagcaccagggtataggtttt
ctaaacgatccgcgtcgtttgaacgtagcactaactcgtgccaaatacggaataattatt
gtcggcaatccgaaggtgctttcgaagcaagagctgtggaaccatttgctgaacttctac
aaggacaaaaaggtgctggtggaaggatcgctgaacaatctgaaggagtcaatgatacag
ttcaccaagccgaaaaagattatcaacacactaaaccccggatcacactttatgaccaat
gctatgtatgatagcaaggaagttctcggcggcggatatttcgatcgtaatccgggtcct
tcaacgagttacgcaaataacccgctcgcaggatatggcagcgggaatagctaccaccag
caaggaggatttatggatatcacaagtcatggcagcagcagcgccagtgctaatacaccg
cttgatgcgttcatgcgcaaagtgcacgatccgattggatacatttcaccacaacgctcg
catcctgcagtcagtaacatgcccgtaccggtgggaatgttcatcaacatgtcgagcgct
ccgtcgcgcttctatcaacagcagcaacaggcagcaatacaggcggcaaaacagacacgc
cgcccggtggtaggaaaaacggccagccaactgctagctgctggttcgggatcgacttct
gtcggcgccaaatcaagccgtcctcgtccaataggtccaccaagcagcagcagcagcagc
atcaacagcggaatcaaccatggcagtaatatggcaggcacatcacttacgcaaggcatg
tcccagaatatgtcccagccgggcttcagtttgtctcagcaggcagaattttcgcaggat
tatatgggcgattatcagtcgcagatggacaacatactgtcgcaagaatcgaactatcac
agccaatccggccctggcgatcggctagcgttcgaactgcactcaagttcgcaattctcc
caaccatactga
DBGET
integrated database retrieval system
