Algicella marina: GO499_11510
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Entry
GO499_11510 CDS
T08414
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
amaq
Algicella marina
Pathway
amaq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
amaq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GO499_11510 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amaq03021
]
GO499_11510 (rpoC)
03400 DNA repair and recombination proteins [BR:
amaq03400
]
GO499_11510 (rpoC)
Enzymes [BR:
amaq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GO499_11510 (rpoC)
Transcription machinery [BR:
amaq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GO499_11510 (rpoC)
DNA repair and recombination proteins [BR:
amaq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GO499_11510 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Lin0512_fam
Motif
Other DBs
NCBI-ProteinID:
QHQ35757
UniProt:
A0A6P1T191
LinkDB
All DBs
Position
complement(2317454..2321665)
Genome browser
AA seq
1403 aa
AA seq
DB search
MNQEVMNPFNPVQPLKTFDEIKISLASPERILSWSFGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYRGVTCEKCGVEVTLQKVRRERMGHIELAAPVAHIWFLKS
LPSRIGLMLDMTLRDLERILYFEQYVVIEPGLTDLKHGQLMTEEEFLDAEDQYGADAFTA
GIGAEAIREMLAAIDLDQEAENLRADLAEATGELKPKKIIKRLKLVENFRESGNRPEWMV
LTVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYSRLDAKGLSSTVKQAKKLVEKERPEVWDILDEVIRE
HPVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNVLSPANGKPIIVPSQDMILGLYYITLMREGMKGEGMVFGSMEEVDHALE
AGVVHLHARITARIEQIDEEGMPIYKRFETTPGRLRLGGLLPLNHKAPFDIVNRLLRKKE
VGEVIDTVYRHCGQKESVIFCDQIMTLGFREAFKAGISFGKDDMVIPDTKWTLVNETRDQ
VKEFEQQYMDGLITQGEKYNKVVDAWSKCSDVVADAMMGAISAMKVDDAGAEMEPNSVYM
MSHSGARGSPAQMKQLGGMRGLMAKPSGEIIETPVISNFKEGLNVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDCIVKIDDCGTELSITAQAAVNDGEVVASLSERILGRVV
AEDVLRPGTDEVLARKGEMLDERMADNIDAAGIQSLQIRSPLTCEAEDGICAACYGRDLA
RGTKVNPGEAVGIIAAQSIGEPGTQLTMRTFHIGGIAQGGSQSFQEASQEGQIVFRNESL
LKNRDGDLVVMSRGMELAIVDENDIERASYKMSYGSKVHVAHGDKVARGDKLFEWDPYTL
PIIAEKSGVAKFVDLAAGISVREETDDATGISQKIVSDWRAAPKGNELKPEIIVMDPATG
EPVRLSNGNPEVHAMSVDAILSVEDGQEIEEGDVLARIPREGAKTKDITGGLPRVAELFE
ARRPKDHAIIAEASGTVHFGKDYKNKRRISIVPSEEGAETIEYMVPKGKHIPVQEGDWIE
KGEYIMDGNPAPHDILQILGVEALADYLIDEVQDVYRLQGVKINDKHIEVIVRQMLQKWE
VSHSGGTILLKGEQVDKAEFDEANAKAVAEGREPAKGGPILLGITKASLQTRSFISAASF
QETTRVLTEAATQGKRDRLIGLKENVIVGRLIPAGTGGATHDIKRIATSRDAAIIADRQE
EAAIALEAPAEDAVVVDETPAAE
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaagtgatgaacccgttcaatccggtccagccgctgaagacgtttgacgag
atcaagatctcgctcgccagcccggaacggatcctgagctggtcgttcggtgagatcaag
aagccggagaccatcaactaccgcacgttcaaaccggagcgggacgggcttttctgtgcc
cgcattttcggcccgatcaaggactacgagtgcctttgcggcaaatacaagcgcatgaaa
tatcgcggggttacctgcgaaaagtgcggcgttgaagtgacactgcagaaggtgcgccgc
gagcggatgggccatatcgagctcgccgcgccggttgcgcatatctggttcctgaaatcg
ctgccatcccgcatcggcctgatgctggacatgacgctgcgcgatctggagcgcatcctc
tacttcgaacagtatgtcgtgatcgagcccggcctgacggacctcaagcatggccagctg
atgacggaggaggagttcctcgacgcagaggatcagtatggtgcggacgccttcaccgcc
gggatcggcgcggaagccatccgtgagatgttggccgcgatcgacctcgatcaggaagcc
gagaacctgcgcgccgatctggccgaggcgaccggtgaactgaagcccaagaagatcatc
aagcgtctgaaactggtggaaaacttccgcgaaagcggcaaccgccccgagtggatggtg
ctgacggtgatccccgtgatcccacccgagctgcgcccgctggtgccgctggatggcggc
cgcttcgcgacttcggacctcaacgatctgtaccgccgggtcatcaaccgcaacaaccgt
ctgaaacggctgatcgagctgcgcgcgccggatatcatcatccgcaacgaaaagcgcatg
ctgcaggaatccgtggatgcgctgttcgacaacggccgccgcggccgcgtgatcacgggt
gccaacaagcgcccgctgaaatcgctgtcggacatgctgaaaggcaagcagggccggttc
cggcagaacctgctcggcaagcgcgtcgacttctcgggccggtccgtcatcgtgacgggg
ccggagctgaagctgcaccagtgcgggttgcccaagaagatggcgctggagcttttcaag
ccgttcatctactcgcggctcgatgccaaggggctgtcttccaccgtgaagcaggccaag
aaactggtcgagaaggagcgcccggaagtctgggacatcctcgacgaggtgatccgcgag
catcccgtgatgctgaaccgcgcgccgacgctgcaccgcctcggtatccaggcgttcgag
cctgtgttgatcgaaggcaaggcaatccagcttcacccgctggtttgctccgcgttcaac
gccgacttcgacggagaccagatggccgtacatgttccgctgagcctcgaggcgcagttg
gaagcacgtgtgctgatgatgtccaccaacaacgtcctgtcgccagcgaacggcaaaccg
atcatcgtgccgtctcaggacatgatcctcggcctctattacattaccctgatgcgtgag
ggcatgaagggcgagggcatggtttttggctccatggaagaggttgatcacgcgctggaa
gcgggtgtggtgcacctgcatgctaggatcacggctcgcatcgagcagatcgatgaagaa
ggcatgccgatttacaagcgtttcgaaaccactcccgggcgtcttcgcctcggtggtttg
ctgccgctgaaccacaaggcgccgttcgacatcgtcaaccggctactccgcaagaaggaa
gtgggcgaggtcatcgacaccgtctaccgtcactgcggccagaaggagtcggtcattttc
tgcgaccagatcatgacgctcggcttccgcgaggcattcaaggcgggcatttcgttcggc
aaggacgacatggtgatccccgacaccaagtggacgctcgtcaacgagacgcgcgaccag
gtgaaggagttcgaacagcaatatatggatggcctgatcacccagggtgagaagtacaac
aaggtcgtcgatgcttggtcgaagtgttccgacgtggtggccgacgccatgatgggtgcg
atctcggcgatgaaggtggacgatgcgggggccgagatggaacccaactccgtttacatg
atgtcccactccggggcgcgtggttcgcctgcgcagatgaagcagcttggcgggatgcgc
ggcctgatggccaaaccgtcgggtgaaatcatcgagacaccggttatttcgaacttcaag
gaaggtctgaacgtgctggagtacttcaactccacccacggtgcccgtaagggtctggcc
gataccgcgctgaagactgcgaactccggttaccttactcgccgtcttgtcgatgttgcg
caggactgcatcgtgaagatcgatgattgtggaactgagctttcgatcacggcacaggcg
gccgtgaatgatggtgaagtcgtagcctcactttccgagcgcattctgggccgcgtcgtg
gccgaggatgtactgcgcccaggtacggatgaagttctggcccgtaagggcgagatgctt
gacgagcgtatggccgacaatatcgacgctgccggtatccagagcctgcagatccgttca
ccactcacctgtgaggcggaggacggtatttgtgcagcctgctacggtcgtgatcttgca
cgcggtaccaaggtgaacccgggcgaagctgtcggcatcattgctgcgcagtccatcggg
gagcctggtacacagttgacgatgcgaacgttccacatcggtggcatcgcacagggtggc
agccaatccttccaggaagcttctcaggaaggtcagatcgtcttccgcaatgagagcctg
ctgaagaaccgtgacggtgaccttgtggtcatgtcgcgcggtatggagttggcgatcgtc
gacgagaacgacatcgaacgtgcctcctacaagatgagctacggatccaaggtccatgtt
gcccacggtgacaaagtcgcccgtggagacaagctcttcgagtgggatccgtacacgctg
ccgatcattgccgagaagtccggtgtggccaaattcgttgatcttgccgcgggcatttcc
gtccgcgaggaaacggatgacgcgacgggcatcagccagaagatcgtttccgactggcgc
gccgcgccgaagggcaacgaactgaagccggaaatcatcgtcatggacccggcgaccggt
gaacctgtgcgtctttccaacggcaaccccgaagtccacgccatgtcggtggacgccatc
ctctccgtcgaagacggtcaggagatcgaggaaggcgatgttctggcgcgtattccgcgc
gaaggtgcgaagacgaaggatatcaccggtggtctgccgcgtgttgccgaactcttcgag
gcccgtcgtccgaaggaccatgcgatcatcgcggaagcctccggaaccgtgcacttcggg
aaggactacaagaacaagcgccgtatctcgatcgtgccgtccgaagagggggcggagacg
atcgagtacatggtgccgaaaggcaagcacatccctgtgcaggaaggtgactggatcgag
aagggcgagtacatcatggatggcaaccccgccccccatgatatccttcaaattctcggc
gtcgaagcgctggccgattaccttattgacgaagtgcaggatgtctaccgtctccaaggt
gtgaagatcaacgacaagcacatcgaggtcattgtccgtcagatgcttcagaaatgggaa
gtttcccattccggtggcacgatcctgttgaagggagaacaggtggacaaagcagagttt
gacgaagcgaacgccaaggctgttgccgaaggtcgggaaccggcgaaaggcggccccatc
ctgctcggcatcacgaaggcgtcgttgcagactcgctcgttcatctccgccgcctccttc
caggagacgacgagggtgctgaccgaagcggcaacgcagggcaagcgtgaccgtctgatc
ggcttgaaggagaacgtgattgtcggtcgcctcatcccggccggcaccggtggtgcgacc
cacgacatcaagcggatcgcaacttcccgcgacgcggcgattatcgccgatcgtcaggaa
gaggcggcgattgctctggaagcgccggcggaagacgccgtcgtcgtggatgaaacacct
gcggcggagtga
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integrated database retrieval system
