Algicella marina: GO499_12145
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Entry
GO499_12145 CDS
T08414
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
amaq
Algicella marina
Pathway
amaq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amaq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GO499_12145 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amaq03019
]
GO499_12145 (rnr)
03016 Transfer RNA biogenesis [BR:
amaq03016
]
GO499_12145 (rnr)
Enzymes [BR:
amaq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
GO499_12145 (rnr)
Messenger RNA biogenesis [BR:
amaq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GO499_12145 (rnr)
Transfer RNA biogenesis [BR:
amaq03016
]
Prokaryotic type
tRNA degradation factors
GO499_12145 (rnr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
Cwp6_N
HTH_Crp_2
Motif
Other DBs
NCBI-ProteinID:
QHQ35871
UniProt:
A0A6P1T2C7
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All DBs
Position
2445243..2447477
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AA seq
744 aa
AA seq
DB search
MSKLPTSNELLTWIRENPRDASKRDVARAFNIKGADRIELKRMLKELTEKGLITKERKHL
RDPNQLPPVSVLRVLGPDANGDLFAEPAQWEGEGEPPRVHLSLRPGEPALGEGDRILART
AVSAEDPALYSARLIRRIGTGPRKLVGIFRAGAEGGRIVPIDKKSDREWQVAPGETHGAR
DGELVEAEQSGPKNRLGLPRAAITERLGNPGAPKAVSLIAIYEHGLPDAFPDEVLEEAAA
AQPVPLGKRTDLRHLPLITIDPADARDHDDAICAIPTPTGFTLWVAIADVAAYVTPGSAL
NREARIRGNSTYFPDRVVPMLPEALSADLCSLHEGEDRPCIAVEMHITKDGTKTGHTFHR
ALMRCPAALAYEEAQAAVDGTPNARTQPFLEDVLTPLFAAYRALAAARERRQPLNLDLPE
RQIVLSDDGHVTSVNFKERLDAHKLVEEFMVLANVAAAETLEQKQRPVMYRVHEEPSPEK
LDALRETAQASGLSFAKGQVLKTKHLNALLDAAAGLEEAELINLSVLRSMTQAYYAPENF
GHFGLHLQRYAHFTSPIRRYADLLVHRALITAHGWGDDGLSEHDIENLAATGELISQAER
RSMIAERDTTDRYLAAYLADRTGSEFAGRVSGIAKFGLFVKLSETGADGLVPLSTLGNEY
WHYDRDSQTLMGSDSGLTIALGTPALVRLKEADGLTGGLIFEMLELDGKSLPTGSTRSRG
KPQKRKLARSRAKSRKISRKAGRK
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaactgccaacgtccaatgaactcctgacatggattcgtgaaaatccgcgagac
gcttccaagcgcgacgtcgcccgtgccttcaacatcaagggggccgacaggatcgagttg
aaacggatgctcaaggagctgacggaaaagggcctcatcaccaaggagcgcaagcatctc
cgcgatccgaaccagttgccacccgtctccgtcctccgtgtgctcggccccgacgcgaac
ggcgatctcttcgccgaaccagcccagtgggaaggcgagggagagccgccgcgcgtccat
ctttccctgcgccccggcgaacccgcgctgggagagggcgaccgtatcctcgcccgtacc
gccgtctccgccgaggaccccgccctctacagcgcccgcctcatccgccggatcggcacc
ggcccgcgcaagctcgtcggcatcttccgcgccggcgccgagggcggccgcatcgttccc
atagacaagaaatcggatcgcgaatggcaggtcgccccgggcgagacccacggcgccagg
gatggtgaactggtagaggcggaacagtcaggcccgaaaaaccgcctcggtctgccccgc
gccgccatcaccgaacgccttggcaatcccggcgcgcccaaggccgtctccctcatcgcc
atctatgagcatgggctgcccgatgccttccccgacgaagtgctggaggaagccgccgcc
gcccagccggtgcccctcggcaagcgcacggacctgcgccacctgccgctgattaccatc
gacccggcggatgcccgcgaccacgacgatgccatctgcgccatacccacgcccaccggc
ttcaccctctgggtcgcgatcgccgatgtcgccgcctacgtcacccccggctccgccctc
aaccgagaggcgcgcatccgcggcaactccacctacttccccgatcgcgttgtcccgatg
ctgcccgaagccctctccgccgatctctgctcgctgcacgaaggcgaggacaggccctgc
atcgccgtcgagatgcacatcaccaaggatggcaccaaaaccggccacacctttcaccgc
gccctcatgcgctgccccgccgcgctggcctacgaggaagcgcaggccgccgtcgacggc
accccgaacgcccgaacccagccgttcctcgaagacgtcctcacccccctcttcgccgcc
taccgtgccctcgcggccgcccgcgagcgccgccaacccctcaacctcgacctgcctgag
cgtcagatcgtcctctccgatgacggccacgtcacctccgtcaacttcaaggagcgcctc
gacgcccacaaactggtcgaggagttcatggtgctggccaacgtcgccgccgccgaaacg
ctggagcagaaacagcgccccgtcatgtatcgcgtgcacgaggagccgagccccgagaaa
ctcgacgccctgcgcgaaactgcccaggcctccggtctctcctttgccaagggccaggtt
ctcaagaccaaacacctcaacgccctgctcgacgccgccgccgggctcgaagaggcggag
ctgatcaacctctccgtcctccgctcgatgacgcaggcctactacgcgccggaaaatttc
ggccatttcggccttcacctccagcgctacgcccattttaccagcccgatccgccgctac
gccgacctgctggtccaccgcgccctcatcaccgcccacggctggggagacgatgggttg
tccgagcacgatatcgagaacctcgccgccaccggggaactcatcagccaggccgaacgc
cgctccatgatcgccgagcgcgacaccacggatcgctacctcgccgcctatctcgccgat
cgcacgggcagcgaattcgcaggccgcgtctccggcatcgccaagttcggcctcttcgtc
aaactctccgagaccggcgccgatggcctcgttccgctcagcacgctcggcaacgaatac
tggcactacgaccgcgacagccagacgctgatgggctcggactccggtctcaccatcgcc
ctgggaacgcctgccctcgtccgcctgaaagaggcggatggcctcaccggcgggctgatc
ttcgagatgctggaacttgacggcaaatccctgcccacgggcagcacccggtcccgcggc
aagccgcaaaagcgcaagcttgcccgcagccgcgccaaatcccgcaagatctcgcgcaag
gctggccggaagtaa
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