Malaciobacter marinus: AMRN_0048
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Entry
AMRN_0048 CDS
T06187
Name
(GenBank) mRNA degradation ribonuclease J1/J2 (metallo-beta-lactamase superfamily)
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
amar
Malaciobacter marinus
Pathway
amar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AMRN_0048
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amar03019
]
AMRN_0048
Messenger RNA biogenesis [BR:
amar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AMRN_0048
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
MupG_C
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
AXX85849
UniProt:
A0A347TGX1
LinkDB
All DBs
Position
47569..49539
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AA seq
656 aa
AA seq
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MEEKKVQEDKAEQQNPKQQKSSTNTRPRSNNKPTSTTTNNTEKTSTSTEDNKKNINNNNQ
RKRKPRPKFQKGDGWISDLKKAHLINEKIHRDRLNPHYKLNLNTNAKVRITPLGGLGEIG
GNMMVIETENCAIIVDVGMSFPDDDMHGVDILIPDFTYIREIKNKIAGIVITHGHEDHIG
AMPYLFKEMQFPVYGTSLPLEMIGSKFDEHKMREHRKFFRAIQKRTPIKIGEFEVEWMHI
THSIIDSSSIAVKTEAGTIIHTGDFKIDHTPIDGYPTDLHRLAHYGEQGVLLLTSDSTNS
HSPGFTKSEKTVGPTFDKIFATAKGRVIMSTFSSNVHRISQAIDRGIKHNRKICIIGRSM
EKNLDLAMTLGYIKFPKEAFIDPHEVNKYNDNEVLIVTTGSQGEPMSALYRMSIHEHRHI
KIKPTDQVILSAKAIPGNEASVSGIMNHLLKAGAKVAYKDFSDIHVSGHAAQEEQKLMLR
LIKPKFFMPVHGEYNHALKHGETGVDCGVLERNLYIMSDGEQVEVTPKYLKKVKTVKTGK
VYIDNQLNNKIADDIVIDRQTMANEGVVMIVAQVNEDDRTLAQKPRVTSFGLVPNKQDRF
FAKEIEDILLIALKNAKPGIFKNNKILEDEIRKVVRKHCFRKYKKYPMIVPTLIVQ
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atggaagagaaaaaagttcaagaggataaggccgaacagcaaaatcctaaacaacaaaag
agttcaacgaatacaaggccaagaagtaataataaacctacttcaacaactacaaataat
acagaaaaaacaagtacttctacagaagataacaaaaagaatataaacaataacaatcaa
agaaaaagaaaaccaagaccaaaattccaaaaaggtgatggttggataagtgatcttaaa
aaagcacacttaattaatgaaaagattcatagagatagattaaatccacactataaatta
aatttaaatacaaatgccaaagtaagaatcactccacttggtggattaggtgaaattggt
ggaaatatgatggtaattgaaactgaaaactgtgcaattattgttgatgttggtatgagt
ttccctgatgatgatatgcacggagttgatattttaattccagattttacttatattaga
gaaataaaaaataaaatcgcaggaatagtaattactcatggtcatgaagatcatattggt
gcaatgccatatttatttaaagagatgcagtttcctgtttatggaacatcattaccatta
gagatgattggttcaaaatttgatgaacataaaatgagagaacatagaaaattctttaga
gctatacaaaaaagaactcctataaaaatcggtgagtttgaagttgaatggatgcatatt
actcactctattattgattcatcatcaattgctgtaaaaacagaagctggaactattatt
catacaggtgattttaaaattgaccatacaccaattgatggatatccaactgacttacat
agattagcacattatggagagcaaggagttttacttcttactagtgattcaacaaattca
cactctcctggttttacaaaatctgaaaaaacagttggccctacttttgataaaattttt
gcaactgcaaaaggtagagttattatgtcaacattttcatcaaatgttcatagaatatct
caagcaattgatagaggaattaaacataacagaaagatttgtattattggaagatcaatg
gagaaaaatcttgatttagcaatgacattaggttatataaaatttcctaaagaagctttt
attgatccacatgaagtaaataaatacaatgataatgaagttcttattgttacaacagga
agtcaaggtgaaccaatgagtgcattgtatagaatgtctattcatgaacacagacatatt
aaaataaaacctacagatcaagttattttatcagcaaaagctattcctgggaatgaagct
agtgtatcaggtattatgaatcatttattaaaagctggagctaaagttgcgtataaagat
tttagtgatattcatgtttctggtcatgcagcacaagaagaacaaaaacttatgttaaga
cttattaaaccaaaattctttatgcctgtacatggtgaatataatcatgcattaaaacat
ggtgaaacgggtgtagactgtggagttttagaaagaaacttatatattatgagtgatgga
gaacaagttgaagttactccaaaatatcttaaaaaagttaaaactgtaaaaactggtaaa
gtatatattgataatcaattaaataataaaattgcagatgatattgtgattgacagacaa
acaatggcaaatgaaggtgttgttatgattgttgcacaagtaaatgaagatgatagaaca
ttagctcaaaaaccaagagttacatcatttggattagttccaaataaacaagatagattt
tttgcaaaagagattgaagatattttattaattgctcttaaaaatgcaaaacctggaata
tttaaaaataacaaaattttagaagatgaaattagaaaagtagtaagaaaacattgtttt
agaaaatataaaaaatatccaatgattgtacctacattaatcgttcagtaa
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