Malaciobacter marinus: AMRN_0543
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Entry
AMRN_0543 CDS
T06187
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
amar
Malaciobacter marinus
Pathway
amar03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
amar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AMRN_0543 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amar03400
]
AMRN_0543 (mfd)
Enzymes [BR:
amar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AMRN_0543 (mfd)
DNA repair and recombination proteins [BR:
amar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AMRN_0543 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
Cas3-like_C_2
SNF2-rel_dom
DUF6794
GpA_ATPase
Motif
Other DBs
NCBI-ProteinID:
AXX86311
UniProt:
A0A347TI83
LinkDB
All DBs
Position
551846..554815
Genome browser
AA seq
989 aa
AA seq
DB search
MKNIFDFFTKKNNCQLLVVNNDKQAQIASDIASFFGYEPFVLADFRANFKDDLLSFSEEL
QDITKALNGFYNYKKKNKILISPIRTISFPMPKEKCFDSFNISFADTLNLEEFKSKLYNW
GYYFVDIVTSQSEVSIRGDIVDICPLGSDIGYRISLFDDEIESIRKFDIEDQKSFKEEIE
SFSINPAFLALDEQTFEELNEEVQKVESDAFIKDIHSLGFWYLNDLGEYLPQNMNTYITI
EALDELEEVYVFEEKRVAKEKFLQTPQVTQSRDYKEIDVANIKEFISFHEGKKVTIISST
EAKIKSFDLDLYDSSINYVIKPYIINIVGDEQIVISLNKEVKKRRKKRVKLVLDELQEGD
FVVHEKHGIGKYHGIEPVTVMGAKRDFVIVMYAGDDKLLLPVENLDLIDRYVADGSSYAV
VDKLGRGSFAKLKQKVKDKLFAIANDIIKIAATRELINGIKIDTNKQVLRDFQKSSGFNY
TKDQERSIKEIFEDLSSGKVMDRLLSGDVGFGKTEVAMNAILATVLDGYQTVFVCPTTLL
ATQHYHSISKRFKEFGITIAKLDSKTSTKEKNHIKKGLESGEIKFVLGTHSLLGIKTKNL
ALVVIDEEHKFGVKQKEKLKALREDVHIFSMSATPIPRTLNLALSKLKGMSSLLTPPNER
LGVRTYVKEYSDKLIKEIILREKRRGGQLFYVHNNIASIEAKKADIEEIVPNIKVEIIHS
KIKPLDAEKIIDAFENKEFDVLLATSIVESGLHLPNANSIIIDGADRFGIADLHQLRGRV
GRSDKEGFCYYVVEDKKQITQDAVKRLVALESNSYLGSGTALAHQDLEIRGGGNIVGEAQ
SGHIKQIGYGLYLKMLEDALAALSGETKEENKNVDIKLAISAYISNDYISEDRVRLELYR
RLSKASSKEEVYSIEEEMEDRFGKPDIVTKQFLELILIKIYAISKGIKQISSYEMNITFV
KSDDTKQSIKSSSKDDDDIISATLQYLRK
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaatatatttgacttttttacaaaaaaaaataattgtcaattattagttgtaaat
aatgataaacaagcacaaatagcatcagatatagcatctttttttggttatgaacctttt
gttctagcagattttagagcaaatttcaaagatgatttattgtcttttagtgaagagtta
caagatattacaaaagctttaaatggtttttataattataagaaaaaaaataaaatatta
atctctcctattagaacaatatcttttcccatgcctaaagaaaagtgctttgatagcttt
aatattagttttgctgatactttaaatcttgaagagtttaaatcaaaactttataattgg
ggttattattttgtagatatagttacaagtcaatcagaagtttcaattagaggtgatatt
gtagatatatgccctcttggaagtgatataggttatagaatctctttatttgatgatgag
attgaaagtattagaaagtttgatattgaagatcaaaaatcttttaaagaagagattgag
agtttttcaattaatcctgcttttttagccttagatgaacagacttttgaagagttaaat
gaggaagttcaaaaagtagaatcagatgcatttataaaagatatacactctttaggtttt
tggtatttaaatgacctaggtgaatatttacctcaaaatatgaatacttatataacaatt
gaagctttagatgaattagaagaagtttatgtttttgaagaaaaaagagttgctaaagag
aagtttttacaaactcctcaagttactcaatcaagagattataaagagattgacgtagca
aatataaaagagtttattagctttcatgagggcaaaaaagttactattatctcatcaaca
gaagcaaaaataaaaagttttgatttagatctttatgattcttctattaattatgtaata
aaaccatatattataaacattgttggtgatgagcaaatagtaatttcattaaacaaagag
gttaaaaaacgaagaaagaaaagagtaaaacttgtacttgatgaacttcaagagggtgat
tttgtagttcatgaaaaacatggtattggtaaatatcatggaatagaacctgtaactgta
atgggtgcaaaaagagattttgttattgttatgtatgcaggagatgataagcttttactc
cctgttgaaaatcttgatttaatagatagatatgttgctgatggaagttcatatgctgtt
gttgataaacttggacgtggaagctttgcaaaactaaaacaaaaggttaaagataaactt
tttgcaatagcaaatgatattataaaaattgctgctacaagagagcttataaatggaata
aaaatagatacaaataaacaagtattaagagatttccaaaaaagttcaggttttaattat
actaaagatcaagaaagaagtattaaagaaatttttgaagatttaagtagtggaaaagta
atggatagattactttcaggagatgtgggatttgggaaaacagaagttgcaatgaatgca
attttagcaacagttttagatggctatcaaactgtttttgtttgtcctacaacactactt
gcaacccaacattatcatagtatttcaaaaagatttaaagagtttggaattacaatagca
aagcttgatagtaaaactagtacaaaagagaaaaatcatattaaaaaaggtttagaaagt
ggtgaaataaagtttgtactaggaactcactctcttcttggaataaaaacaaaaaatcta
gctttagttgtaatagatgaagagcataagtttggagtaaaacaaaaagaaaaattaaaa
gcattaagagaagatgttcatattttctctatgagtgcaacaccaattccaagaacatta
aatttagcacttagtaaattaaaaggtatgagtagtttattgactcctccaaatgaaaga
ctaggagttagaacctatgttaaagagtatagtgataaattaataaaagagataatttta
agggaaaaaagacgaggtggtcaacttttctatgttcataataacatcgcttcaattgag
gctaaaaaagcagatattgaagaaatagttccaaatatcaaagttgagattattcactct
aaaattaaacctttagatgcagaaaaaattattgatgcttttgagaataaagagtttgat
gtattattagctacttcaattgtagaatcaggacttcatttgccaaatgcaaactcaata
attatagatggtgctgataggtttggtattgctgatttacaccaactaagaggaagagtt
ggacgaagtgacaaagaaggtttttgttattatgtagttgaagataaaaagcaaattacg
caagatgctgtaaaaagacttgtagctttagagtcaaattcataccttggaagtggaact
gcacttgcccatcaagatttagaaattagaggtggtggaaatattgttggtgaagcacaa
agtggacatattaaacaaatagggtatggactatatttaaaaatgcttgaagatgcatta
gcagctttaagtggagaaacaaaagaagagaacaaaaatgttgatatcaaacttgcaatt
agtgcttatatctcaaatgattatattagtgaagatagagtaagactggaattatacaga
agattaagtaaagcaagtagcaaagaagaagtatattctattgaagaagagatggaagat
agatttggtaagcctgatattgttacaaagcagtttctagaacttattttaattaagatt
tatgcaataagtaaaggtataaaacaaataagttcatatgaaatgaatattacatttgta
aaaagtgatgatacaaaacaaagtataaaatcatcttcaaaagatgatgatgacattata
tctgcaacacttcaatatttgagaaaataa
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