Malaciobacter marinus: AMRN_2319
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Entry
AMRN_2319 CDS
T06187
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
amar
Malaciobacter marinus
Pathway
amar03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
amar00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AMRN_2319 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amar03021
]
AMRN_2319 (rpoC)
03400 DNA repair and recombination proteins [BR:
amar03400
]
AMRN_2319 (rpoC)
Enzymes [BR:
amar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AMRN_2319 (rpoC)
Transcription machinery [BR:
amar03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AMRN_2319 (rpoC)
DNA repair and recombination proteins [BR:
amar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AMRN_2319 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AXX88031
UniProt:
A0A347TN53
LinkDB
All DBs
Position
complement(2375201..2379730)
Genome browser
AA seq
1509 aa
AA seq
DB search
MSKTEKVLKPIEIKELERPQDFSAFQLRLASPEKILSWSCGEVKKPETINYRTLKPERDG
LFCAKIFGPIKDYECLCGKYKKMRYNGVVCEKCGVEVTSSKVRRHRMGHIDLVSPVAHIW
MVSSLPTRIGTLLGVKLKDLERVLYYEAYIVSEPGEAYYDNEKTKKVLKYDILNEEQYRT
ISDLFEHTGFEANMGGDIVRNLLEYLDLFELLEKLKSEMSSTKSEAKRKTIIKRLKVVEN
FINSGNRPEWMMLTQLPVLPPDLRPLVSLDGGKFAVSDVNDLYRRVINRNNRLKRLTELD
APEIIIRNEKRMLQEAVDALFDNGKTANAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKR
VDFSGRSVIVVGPSLNMDQCGIPKKMALELFKPHLMAKLEEKGYATTLKSSKRLIESETN
EVWECLSEIVNEYPILLNRAPTLHKLSIQGFHPVLIDGKAIQLHPLVCAAFNADFDGDQM
AVHVPLSQEAIAEAKILMMSSMNIILPASGRAIAVPSQDMILGIYYLSLSKDGVKGQHKL
FTDVNEVKIALEMKQVDLHAKIRTKLDDKIIHTTVGRLIVKEILPEFVPENLWNKILKKK
DIGTLVDYIYKHGGYKVTPRFLDNLKNLGFRYATDAGISVSIADIKVPESKADHVVKSKK
EVIEVQKQFSQGLLTEQERYNKIIDIWTEINNTLGSEMMEIIETDKNGFNSIYMMADSGA
RGSAAQIRQLAGMRGLMAKPDGSIIETPIISNFREGLNVLEYFISTHGARKGLADTALKT
ANAGYLTRKLIDVSQNVRITTDDCGTHEGIEITDLSSGNELIESLEERITGRVIAEDIID
PISNEILFTEGTLITEENAKVVADAEVKSVVIRTPLTCKVENGLCSKCYGLNLGEQRKAN
PGEAVGVLAAQSIGEPGTQLTLRTFHVGGTASATQTERELKVDKEGFIRYYNIKTYIDKA
NRIIVANRRNAGVLLVEPKINAPFKGKVTVETIHEETILTISNGKENKKYYLRKNDVAKP
NELAGVSGKIDGKLYLPYSNGDEVGENESIVEMIKDGWNVPNRIPFASILRVEDGDPITS
NVLSNAKGIVKYYKLKGDYLERRHDIKAGDEVVEKGLFSVIVDADDREALRHYIARGSLV
EFSDDSPVEKDSIIAIPKTQEQNVIAEWDPYANPTIAEEAGTIAFEDIIPGVTVSEQYDE
LTGTSKLVVNEYIPAGYKPTISLATSNKEVLRYSLEPKTSLNVSEGQKVEVADVLGKTPK
ATQKSKDITGGLPRVSELFEARRPKNIAVLASFDGIVSFGKPLRNKQRIVITDANGAKAE
FLVEKSKQILVHEGEFVHAGEALTEGQLASHDILKILGEKALHGFIVSEVQQVYRSQGVN
IADKHIEVILSQMLRQVSILDGGDTKFIVGDMISKKRFKIENERIIKLGGEPAIAEPLLL
GITRAAVTSDSIISAASFQETTKVLTEAAISAKMDMLEDLKENVVIGRTIPVGTGLYKDK
KIKFSYGDK
NT seq
4530 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaactgaaaaagtattaaaacctatcgaaataaaagagttagaaagaccacaa
gatttttctgcttttcaacttagacttgcaagtccagaaaaaattctttcttggtcttgt
ggtgaagttaaaaaaccagaaacaataaactacagaactttaaaaccagaaagagatggt
cttttttgtgctaaaatatttggtccaataaaagattatgagtgtctttgtggtaaatat
aaaaaaatgagatacaacggagttgtatgtgaaaaatgtggagttgaagtaacttcttca
aaggtaagaagacacagaatgggtcatattgatcttgtttctcctgtagcacacatttgg
atggtgtcatctcttcctacaagaattggtacacttttaggtgttaaattaaaagatctt
gaaagagtactttattatgaagcatatattgtaagtgagccaggtgaagcttattatgat
aatgagaaaacaaaaaaagttcttaaatacgatatattaaatgaagaacaatatagaact
atttctgatttatttgaacatacaggatttgaagctaatatgggtggagatattgtaaga
aatcttttagaatatcttgacttgtttgaacttttagaaaaattaaaatctgaaatgtca
tctactaaatctgaagcaaaaagaaaaactattatcaaaagattgaaagtagttgaaaac
tttattaattcaggaaatagaccagaatggatgatgttaactcagcttccagttcttcca
cctgatttaagaccattagtatcattagatggtggtaagttcgcagtttctgatgtaaat
gacttatatagaagagttattaacagaaataacagacttaaaagacttactgaacttgat
gcacctgaaattattattagaaatgaaaaaagaatgcttcaagaagcagttgatgcttta
tttgataatggaaaaactgcaaatgcagttaagggtgcaaataaaagacctttaaaatca
ttatctgaaattattaaaggtaaacaaggtagatttagacagaacttacttggtaaaagg
gttgacttctcaggtagatctgttattgttgtaggaccatctttaaatatggatcaatgt
ggtattcctaaaaaaatggctcttgagttatttaaaccacacttaatggcaaaactagaa
gaaaaaggttatgcaacaactttaaaatcttcaaaaagattaattgagagtgaaacaaat
gaagtttgggaatgtttatctgaaatagtaaacgaatatccaatactattaaatagagca
ccaactcttcataaattgtcaattcaaggtttccaccctgtattaattgatggtaaagca
attcagttacatccattagtttgtgctgcatttaatgctgactttgatggtgaccaaatg
gcagttcacgtgccattgtcacaagaagcaattgctgaagctaagattttaatgatgtca
tctatgaatattattttacctgcatcaggtagagctattgcggttccatcgcaagatatg
attttaggtatttattatctttcattatcaaaagatggagtaaaaggtcaacataaatta
tttacagatgtaaatgaagttaaaattgctttagaaatgaagcaagtagatttacatgca
aaaattagaacaaaattagatgataaaatcattcatacaacagttggaagactgattgta
aaagagattttacctgaatttgtacctgaaaatttatggaataagattttaaagaaaaaa
gatattggaacattagttgattatatttataaacatggtggatataaagtaactccaaga
tttttagataatcttaaaaacttaggttttagatatgcaacggatgctggtatttctgtt
tcaattgcagatattaaagtacctgaatcaaaagcagatcatgtagttaaatctaaaaaa
gaagttattgaagttcaaaaacaattttctcaaggtttattaactgagcaagaaagatat
aataaaattattgatatttggactgaaattaataatactcttggatcagaaatgatggag
attattgaaactgataaaaatggttttaactctatttatatgatggctgactctggggct
agaggttctgctgcacagattagacagcttgcaggtatgaggggtcttatggctaaacct
gatggttcaattattgaaacaccaattatttctaactttagagaaggtctaaatgtactt
gagtactttatttctactcacggtgctagaaaaggtttagcagatacagcacttaaaaca
gcaaatgctggttatttaacaagaaaattaattgatgtatctcaaaatgtgagaattact
acagatgattgtggaactcatgagggtattgaaattactgatttatcttctggtaatgaa
ttaattgaaagtttagaagaaagaattactggtagagtgattgcagaagatataattgat
cctatttctaatgaaattttgtttacagaagggacattaattacagaagaaaatgcaaaa
gttgttgctgatgctgaagtaaaatctgttgtaattagaacacctttaacttgtaaagta
gaaaatggattatgttcaaaatgttatggtctgaatcttggtgagcaaagaaaagcaaat
ccaggtgaagctgttggtgtattagcagctcaatcaattggtgagccaggaacacagctt
acacttagaactttccacgttggtggtactgcaagtgctactcaaacagaaagagaatta
aaagttgataaagaaggttttattagatattacaatataaaaacatatattgataaagca
aatagaatcattgttgcaaacagaagaaatgctggtgttttacttgttgagcctaaaatc
aatgctccttttaaaggtaaagtaacagttgaaactatacatgaagaaacaattttaaca
atttctaatggaaaagagaacaaaaaatattacctaagaaagaatgatgttgctaagcca
aatgagcttgcgggtgtatctggaaaaattgatggtaaattatatcttccttattcaaat
ggagatgaagttggtgaaaatgaatcaattgttgagatgataaaagatggatggaatgta
ccaaacagaatcccatttgcttcaatcttaagagttgaagatggagatccaattacatca
aatgtattatcaaacgcgaaaggtattgtaaaatactataagctaaaaggtgattattta
gaaagaagacatgacattaaagctggtgatgaagttgttgaaaaaggtcttttctctgtt
attgttgatgcagacgatagagaagctttaagacactatattgcaagaggttctttagta
gaatttagtgatgatagtccagttgaaaaagactctatcattgcaattccaaaaacacaa
gaacaaaatgttattgctgagtgggatccatatgcaaacccaacaattgcagaagaagct
ggtacaatcgcatttgaagatattattccaggtgtaacagtatctgagcaatatgatgaa
ttaactggtacttcaaaactagttgtaaatgaatacattccagcaggttataaacctact
atttcattggcaacaagtaataaagaagtattaagatattcattagaaccaaaaacttca
ttaaatgttagtgaaggtcaaaaagttgaagttgcagatgttttaggtaaaacaccaaaa
gctactcaaaaatcaaaagatattactggaggtcttccaagagtatctgaattgtttgag
gctagaagacctaaaaatattgcagtacttgcttcatttgatggtattgtttcatttggt
aaaccacttagaaataaacaaagaattgttattactgatgcaaatggtgcaaaagcagag
ttcttagtagaaaaatctaaacagattttagtacatgaaggtgagtttgttcatgctggt
gaagcattaacagagggacaattagcatcacatgatatattaaaaattctaggtgaaaaa
gcacttcatggatttattgtatcagaagttcagcaagtatatagatctcaaggggtaaat
attgcggataaacatattgaggttattttatctcaaatgttaagacaagtttctatttta
gatggtggagatactaaattcatcgttggtgatatgatatctaagaaaagatttaaaata
gaaaatgaaagaattatcaaacttggcggtgagccagcaattgctgaaccattattactt
ggtattacaagagctgctgtaacatctgattctattatatcagctgcatcgttccaggaa
actactaaagttttaacagaagctgcaatttctgctaagatggatatgttagaagactta
aaagaaaatgttgttattggtagaactattccagttggaacaggtttatacaaagataaa
aaaatcaaattttcttatggagataaataa
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integrated database retrieval system
