Malaciobacter marinus: AMRN_2320
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Entry
AMRN_2320 CDS
T06187
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
amar
Malaciobacter marinus
Pathway
amar03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
amar00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AMRN_2320 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amar03021
]
AMRN_2320 (rpoB)
03400 DNA repair and recombination proteins [BR:
amar03400
]
AMRN_2320 (rpoB)
Enzymes [BR:
amar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AMRN_2320 (rpoB)
Transcription machinery [BR:
amar03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AMRN_2320 (rpoB)
DNA repair and recombination proteins [BR:
amar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AMRN_2320 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DUF2664
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AXX88032
UniProt:
A0A347TN54
LinkDB
All DBs
Position
complement(2379723..2383868)
Genome browser
AA seq
1381 aa
AA seq
DB search
MLNSLKSGNRLRVDFAKNPQQIEIPNLLQLQQNSYDNFLMIGKDERFDAGIEKVFKSVFP
IHDAQNRVTLEYLGSEVGKPKYDVRESMVRGLTYSIPLKINIRLTLWELDEKTGEKIGVK
DMKEQSLFIREIPLMTDRTSFIVNGVERVVVNQLHRSPGVIFKEEEANTSGHKLIYTGQI
IPDRGSWLYFEYDAKDVLYVRINKRRKVPVTILFRALGYSKEDIIKLFYPIINVKVKNNK
FLTKFNPDDYSGRLDFDLKDEKGNLILAAGKRLTARKAKALVEGGLELVEYPVELLMDRS
TASTIFDPESGEVLFDALTNLDELKLKKLLDLGFDSFDIANDLATGVDDSIINAFKADSE
SLKLLKQTEQIDDENDLSAIRIYKVMRPGEPVTKEAAKEFVRKLFFDPERYDLTKVGRMK
MNHKLGVNVPEYVTVLTYEDVIKTVQYLVKVKSGHGHIDDRDHLGNRRIRAIGELLANEL
HSGLIKMQKAIRDKMTTLSGTLEDLMPHDLVNSKMITSTITEFFTSGQLSQFMDQTNPLS
EVTHKRRLSALGEGGLVKERAGFEVRDVHPTHYGRICPVETPEGQNIGLINTLSTYAKVN
DLGFIEAPYKKVKDGVVTNEITYMTATLEEGLVIAPGSTKVDDNGKIVEPLIEARQNGEI
LLMERSKVSYIDISSQMVMGVAASLIPFLEHDDANRALMGSNMMRQAVPLLKPNAPIVGT
GLEKTVARDAWEAIKASRAGVVEKADAKNIYIRGEDESGAFIDHYQISKNSRTNNNTSFG
QRVAVKQGQEVEKGQVIADGPSMDKGELAVGVNAMVAFMPWNGYNYEDAIVLSQRLIKED
AFTSVHIYEKDVECRELKHGNEEITRDLPGVKEESISHLDASGIIKVGTFVKPGMILVGK
VTPKGEIKPTPEERLLRAIFGEKAGHVINKSLYCPTSMEGTVVDVKVFTKKGYEKDERAV
AEIESEKSELDVKHHDKLLMLDREEILKINDLLSKSALDKDVEVDGTTYKKGDNIPFDVL
SNVNRFAMKKVVASYNRDVQNVYNNIKEHFIKQKSTLRQEHEEKLQVLEHDDILPSGVIK
QVKVYIATKRKIKVGDKMAGRHGNKGIVSNIVPQVDMPYLEDGTTVDVILNPLGVPSRMN
IGQIMEVHLGLVGKRLGNQIQEIFEAKRAEFIIELREKMSEIASTAKLMKGKEFMNSLTD
EELVDYAQDWAKGVRFATQVFDGVEVYEFEKLFELAKIDTDGKSALYDGKTGDKMKERVN
VGYMYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGATSV
LKEMLTTKSDDVEGRTRAYRAIANGENVPRSGVPETFFVLTKELKALGLDVDIFDEVEEN
E
NT seq
4146 nt
NT seq
+upstream
nt +downstream
nt
atgttaaactctttaaaatctggtaatagacttagagttgattttgcaaaaaatccacaa
caaatagaaattccaaatctactacaattacaacagaactcttatgataactttttgatg
ataggaaaagatgaaagatttgatgctggtattgaaaaagtatttaaatcagtattccct
attcatgacgcacaaaatcgagttactttagagtacttaggttcagaagttggtaaaccc
aaatatgatgttagagagtcaatggttaggggtcttacttattcaattccattgaagatt
aatattagattaactttatgggaacttgacgaaaaaactggtgagaaaatcggtgttaaa
gatatgaaagaacaatctttattcatcagagaaattccacttatgacagacagaacttct
ttcatcgttaatggtgttgaaagagttgttgtaaaccaactacacagatctccaggtgtt
atcttcaaagaagaagaagcaaatacttcaggtcacaagttaatctatactggtcaaatt
attccagatagaggttcttggttatattttgaatatgatgcaaaagatgtattgtatgta
agaattaacaaaagaagaaaagtacctgttacaattctttttagagcattaggttactct
aaagaagatattataaaacttttttatccaataattaatgtaaaagttaaaaataataaa
tttttaacaaaatttaatccagatgattattctggtagattagattttgatttaaaagat
gaaaaaggtaatttaattttagctgctggtaaaagacttacagctagaaaagcaaaagct
ttagttgaaggtggacttgaattagttgagtatccagttgaattattaatggatagatca
acagcaagtactatttttgatccagagtctggagaagtattatttgatgctttaacaaat
ttagatgaattaaaattaaaaaaattattagatttaggatttgattcatttgatattgct
aatgatttagcaactggtgttgatgattcaattatcaatgcatttaaagcagatagtgag
tctttaaagctattaaaacaaacagaacaaattgatgatgaaaatgatttatcagcaatt
agaatttataaagttatgagaccaggtgagcctgtaacaaaagaagctgctaaagagttt
gttagaaaactattttttgatccagaaagatatgatttaacaaaagttggtagaatgaaa
atgaaccataaacttggtgttaatgttcctgagtatgtaacagtactaacttacgaagat
gtaattaaaactgttcagtatttagtaaaagttaaatcaggtcacggacatattgatgat
agagatcacttaggtaatagaagaattagagcaattggtgaacttcttgcaaatgagtta
cattctggacttattaaaatgcaaaaagctattagagataaaatgactacattaagtggt
acattagaagatttaatgccacatgatttagtaaactctaaaatgattacatcaacaatt
actgaattctttacatcagggcaattgtcacaatttatggatcaaactaacccattatca
gaagttactcataaaagaagactttctgcacttggtgagggtggattagttaaagaaaga
gctggatttgaagtaagagatgttcacccaactcattatggaagaatctgtccagttgaa
actcctgagggacaaaatattgggcttattaatactttatcaacttatgcaaaagtaaat
gatttaggatttattgaagctccatataaaaaagttaaagatggtgtagtaacaaatgaa
attacttacatgactgcaactttagaagaaggacttgtaattgcacctggttcaacaaaa
gttgatgataatggtaagattgtagagcctttaattgaagctagacaaaatggtgaaatt
ttacttatggaaagaagtaaagtaagctatattgatatctcttcacaaatggttatgggt
gttgctgcctcacttattccattcttagaacatgatgatgccaacagagcacttatgggt
tcaaatatgatgagacaagctgttccattattaaaacctaatgctcctattgttggtaca
ggtttagaaaaaacagtagcaagagatgcttgggaagctataaaagcctctagagcaggt
gttgttgaaaaagcagatgctaaaaacatctacatcagaggtgaagatgaaagtggtgca
tttattgaccattatcaaattagcaagaactcaagaacaaataataatacatcatttgga
caaagagttgcagtaaaacaaggtcaagaagttgaaaaaggtcaagttattgctgatggt
ccttcaatggataaaggtgaattagctgttggtgttaatgcaatggttgcatttatgcct
tggaatggttataactatgaagatgctattgttctttctcaaagattgataaaagaagat
gcatttacatctgtacatatttatgaaaaagatgttgaatgtagagaacttaaacatggt
aatgaagaaatcactagagatttaccaggtgtaaaagaagaatcaatttctcatttagat
gcgtctggtattattaaagttggtacttttgttaaaccaggaatgattttagttggaaaa
gttacaccaaaaggtgagattaagccaactccagaagaaagacttttaagagcaattttt
ggtgaaaaagctgggcatgttattaataaatcattatattgtccaacatcaatggaaggt
actgtagtagatgttaaagtatttactaaaaaaggttatgaaaaagacgaaagagcagta
gcagaaattgaatcagaaaaatctgaacttgatgttaaacatcatgataaattattgatg
cttgatagagaagagattttaaaaattaatgatttattatcaaaatcagcattagataaa
gatgttgaagtagatggaacaacttacaaaaaaggtgataatataccatttgatgtactt
tcaaatgtaaatagatttgctatgaaaaaagtagttgcttcatataacagagatgttcaa
aatgtttataacaatattaaagagcattttatcaagcaaaaatctacattaagacaagaa
catgaagaaaagcttcaagttcttgagcatgatgatattttaccaagtggtgtaattaaa
caggtaaaagtatatattgcaactaaaagaaagattaaagttggtgataaaatggctggt
agacacggtaacaaaggtatcgtttctaatattgttcctcaagttgacatgccatattta
gaagatggaacaactgttgatgtaattcttaacccacttggggttccatcaaggatgaat
atcggtcaaattatggaagttcacttaggtttagttggtaaaagacttggtaatcaaatc
caagaaatatttgaagctaaacgagcagagtttataattgaacttagagaaaaaatgtct
gaaattgcaagtactgctaagcttatgaaaggtaaggaatttatgaattctttaactgat
gaagaactagttgattatgcacaagattgggcaaaaggtgttagatttgctactcaagta
tttgatggtgttgaagtatatgagtttgaaaaactttttgaattagcaaaaattgataca
gatggtaaatcagcactttatgatggaaaaactggtgataagatgaaagaaagagtaaat
gtaggttatatgtatatgctaaaacttcatcacttagttgatgaaaaagttcatgcaaga
tctactggaccatattcacttgttacacaacaaccagttggtggtaaagcactatttggt
ggacaaagatttggtgagatggaagtttgggcattagaagcatatggtgctactagtgtt
cttaaagagatgcttacaacaaaatcagatgatgttgaaggtagaacaagagcttataga
gctatagcaaatggggaaaatgttccaagatcaggtgttcctgaaacattcttcgtatta
acaaaagagcttaaagctcttggtttagacgttgatatttttgacgaggtagaagagaat
gagtaa
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integrated database retrieval system
