Malaciobacter marinus: AMRN_2435
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Entry
AMRN_2435 CDS
T06187
Symbol
rho
Name
(GenBank) transcription termination factor
KO
K03628
transcription termination factor Rho
Organism
amar
Malaciobacter marinus
Pathway
amar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AMRN_2435 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amar03021
]
AMRN_2435 (rho)
03019 Messenger RNA biogenesis [BR:
amar03019
]
AMRN_2435 (rho)
Transcription machinery [BR:
amar03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
AMRN_2435 (rho)
Messenger RNA biogenesis [BR:
amar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AMRN_2435 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
S1CSD-TOTE-2
OB_RNB
AAA
AAA_22
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
AXX88137
UniProt:
A0A347TNF9
LinkDB
All DBs
Position
complement(2502642..2503985)
Genome browser
AA seq
447 aa
AA seq
DB search
MEESKTQSKTKSPKTNGNSSRKTRTHIPVEGHTIEKLREYPLQDLLKIAKELRVENPQEL
KRQDLMFSILKNQIDAGGFVLFTGILEIKEGGFGFLRAIDGNFSDTSSDSYVSATQIRKF
ALRTGDIVTGQVRPPNKESEKYYALLKIEAINYLPVNESKNRPLFDNLTPLYSTDKFKFE
YNSNKMTGRILDLFAPMGKGQRSLIVAPPKTGKTELLKELAHGITKNHPETNLMVLLIDE
RPEEVTDMQRSVKGEVYSSTFDLPAHNHVRVAEIVIEKAKRLVEMKKDVVILLDSITRLA
RAYNTVTPSSGKVLSGGVDANALHKPKRFFGAARNIEEGGSLTIISTALIETGSKMDEVI
FEEFKGTGNSEVVLSRNASNRRVYPALDIIKSGTRKEELLLTPEVLQRTWILRNAISQMD
EVEALKFLYSKMQRTKDNEEFFNSMNE
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atggaagagtcaaaaactcaatctaaaacaaaaagtcccaaaacaaatgggaattctagt
agaaaaactagaactcatattcctgttgaagggcacacaattgaaaaattaagagaatat
cctttacaggaccttcttaaaatagcaaaagagctaagagttgaaaacccacaagagcta
aaaagacaagacttgatgttctcgattttgaaaaatcaaatcgatgcagggggatttgtc
ttattcacaggtattttagaaataaaagagggtggatttggttttttaagggcaattgat
ggaaacttctctgatacttcaagtgattcttatgtatcagcaactcaaattagaaaattt
gcattaagaactggtgatatcgtaactggacaagtaagacctccaaacaaagagagtgaa
aaatattatgctttattaaaaattgaagctataaactacttacctgtaaatgaatcaaaa
aatagacctttatttgataacttaactcctttatactcaactgataaattcaaatttgaa
tataattcaaataaaatgacaggtagaatacttgatctttttgctccaatgggtaaagga
caaagaagtttaatagttgctcctccaaaaactggtaaaacagagttattaaaagagtta
gctcatggtattacaaaaaatcatcctgaaacaaatttaatggttttattaattgatgaa
agaccagaagaagtaactgatatgcaaagaagtgtaaaaggggaagtttattcttctact
tttgatttacctgctcataatcatgtaagagttgctgaaattgtaattgaaaaagcaaaa
agacttgttgaaatgaaaaaagatgtagtaattttacttgattctattacaagactagct
cgtgcttataatactgtaacaccaagttctggaaaagtactttcaggtggtgtggatgca
aatgcattacataaaccaaaaagattttttggagctgctagaaatatagaagagggtggc
tctttaactattatatcaactgcacttattgaaactggttcgaaaatggatgaagtaatt
tttgaagagtttaaaggaactggtaatagtgaagttgtattaagtagaaatgcttcaaat
agaagagtttatccagctttagatattattaaatctggaactagaaaagaagagttacta
ttaactcctgaagttcttcaaagaacatggatattaagaaatgcaatttcacaaatggat
gaagttgaagctttaaaattcttatattcaaaaatgcaaagaacaaaagataacgaagag
ttttttaactctatgaatgagtag
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