Agromyces marinus: DSM26151_20560
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Entry
DSM26151_20560 CDS
T08161
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
amau
Agromyces marinus
Pathway
amau03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
amau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DSM26151_20560 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amau03400
]
DSM26151_20560 (mfd)
Enzymes [BR:
amau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DSM26151_20560 (mfd)
DNA repair and recombination proteins [BR:
amau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DSM26151_20560 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
UIP59159
LinkDB
All DBs
Position
complement(2205194..2208850)
Genome browser
AA seq
1218 aa
AA seq
DB search
MILQGLNTALSRASTIDRALAEAERSADFSAPTGLDAPLLAALLERRIANGRPSVLFVVT
ATSREGESLRTSLAPYLDGAEILEFPAWETLPHERLSPSAETVGRRMHAIRRMAAWKADG
PRHPLVVVASVRAALQPVADNLADLEPVELAVGGRGHDLSAIALRLVDLAYARVDMVSRR
GEFAVRGGILDVFPPTADHPVRVDFFGDEVEELRAFSVADQRSLPEKVERVLLAPSRELL
LTEPVRQRAREMVHEFPNLSGMLEKVSEGIPVEGMESLAPALLERLVPVTDYLPEGAAVA
VVGPERVAGRAVSLAETNREFLAAAWGAATVGAAAPIDLAAGDFLTLRALRESVLFSAPG
SPGTDRVWWTFSSFDQGDAAEAVGETAGGADAAYVRVAATSVPSFQGNVEGAVAHVGERL
REGWSLVVAAAGHGLVERARDVLAEHGLAGRLVETVPDELEPGVAYLVQAQAAAGFEVPD
ARLGLIAEAEFYGRSAGYDSRQVKKLASRRRNVVDPLQLKAGDHVVHATHGIGRFVELVQ
REVAGARPTGPSRTAGIKPAPKTVREYVVLEYAASKRGQAGDRLYVPMDQLDLLSRYVGG
ESPSLSKMGGSDWAQAKSKARKAVRDIAVELVKLYSARMSAKGHAFGPDSPWQHELEEAF
PYVETPDQVQTIDEVKADMERPIPMDRLLAGDVGFGKTEVAVRAAFKAIQDGKQVAMLVP
TTLLVKQHFETFSERFAGFPVHVRALSRFQTDREARETIAGLADGTVDMVIGTHRILTEK
VSFKDLGLMVIDEEQRFGVEHKDALKKLKTNVDILAMSATPIPRSLEMAVTGIREMSTLA
TPPEDRHPILTFVGPHSDQQVAAAIRREMLREGQVFFVHNRVSSINRVAAHLAELVPEAR
IAVAHGQLNEHMLEQIVVDFWERRFDVLVSTTIIETGLDISNANTIIIDRADKYGLSQLH
QLRGRVGRGRERAYAYFLYDPAKPLSETAHDRLSTIAANNELGGGMQIALKDLEIRGAGN
LLGAEQAGHIAGVGFDLYLRMIGEAVNAFRGDVAEGQTELRLELPVDAHIPDDYVDSERL
RLEAYQKLSAASGPAAKDGAIDLVVEELVDRYGDLPEPVEHLVAVSRLRRKAQLAGLSDV
IATGSKLRIAPAKLPDSRRVRLERMYPGAKLFPQNDVALVPFPTPGGEAPGDGDLIAWVS
NLIGAIFPAEQPAEAVTG
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
gtgatcctgcagggcttgaacacggcgctctcgcgcgcctccacgatcgaccgagccctc
gccgaggccgagcgcagcgccgacttctcggcgccgaccggactcgacgcgccgctgctc
gcagccctgctcgaacgccgcatcgcgaacggccgtccgtcggtgctcttcgtcgtcacg
gcgaccagccgcgagggcgagtcgctgcgcacgtcgctggcgccgtacctcgacggcgcc
gagatcctcgagttccccgcatgggagacgctgccgcacgaacgactcagcccgagtgcc
gagaccgtcgggcgccgcatgcacgcgatccggcggatggccgcgtggaaggccgacggc
ccgaggcatccgctggtcgtcgtcgcatcggtgcgggccgcgctccagcccgtcgccgac
aacctcgccgacctcgagcccgtcgaactggccgtgggcggccgcgggcacgacctctcg
gcgatcgcactgcgcctcgtcgacctcgcctacgcgcgcgtcgacatggtctcgcgccgg
ggcgagttcgcggtgcgcggcggcatcctcgatgtgttcccgcccacggccgaccacccc
gtccgcgtcgacttcttcggcgacgaggtcgaagagctccgcgcgttctcggtcgccgac
cagcgctcgctccccgagaaggtcgaacgcgtgctcctcgcaccgagccgcgaactgctg
ctcaccgagccggtgcgccagcgcgcccgcgagatggtgcacgagttcccgaacctgtcg
ggcatgctcgagaaggtctccgagggaatccccgtcgagggcatggaatcgctcgcaccc
gcactgctcgagcgcctcgtgcccgtcacggactacctccccgagggggccgcggtcgcg
gtcgtcgggccggaacgggtcgcgggccgagccgtgagcctcgccgagaccaaccgcgag
ttcctcgcggccgcatggggtgcggcgaccgtcggtgccgcagcgcccatcgacctggcc
gcgggcgacttcctcacccttcgggcactgcgggagtcggtgctgttcagcgcgcccggt
tcgcccgggaccgaccgggtgtggtggaccttctccagcttcgaccagggcgatgcggcc
gaggccgtgggcgagaccgcgggcggggcggatgccgcctacgtgcgcgtcgccgcgacg
agcgtgccgagcttccagggcaacgtcgagggcgcggtcgcccacgtcggcgaacgactg
cgcgagggctggagcctcgtcgtcgcggccgccggccacggcctcgtcgaacgcgcgcgc
gacgtgctcgccgagcacggactcgcgggccgcctcgtcgagaccgttcccgacgagctc
gagccgggcgtcgcctacctcgtgcaggcgcaggccgcagcgggcttcgaggtgcccgac
gccaggctcgggctcatcgccgaggccgagttctacggtcgatccgccgggtacgactcg
cgtcaggtcaagaagctcgcgagccgccgccgcaacgtcgtcgacccgctccagctcaag
gccggcgaccacgtcgtgcacgccacgcacggcatcggccgcttcgtcgagctcgtgcag
cgcgaggtcgccggcgcgcgcccgaccgggcccagccgcacggccgggatcaagccggcc
cccaagacggtgcgcgagtacgtcgtgctcgagtacgccgcgtccaagcgcgggcaggcc
ggcgaccggctctacgtgcccatggaccagctcgacctgctcagccggtacgtcgggggc
gagtcgccgagcctgtccaagatgggcggcagcgactgggcgcaggcgaagtcgaaggcg
cgcaaggccgtgcgcgacatcgcggtcgagctcgtcaagctctactcggcgcggatgtcg
gccaaggggcatgccttcgggcccgactcgccgtggcagcacgagctcgaggaggccttc
ccctacgtcgagacccccgaccaggtgcagaccattgacgaggtcaaggccgacatggaa
cgcccgatccccatggaccgcctgctcgcgggcgacgtcggattcggcaagaccgaggtc
gccgtccgcgccgcgttcaaggccatccaggacggcaagcaggtcgcgatgctcgtgccc
acgaccctgctcgtcaagcagcacttcgagacgttctcggagcggttcgcgggcttcccc
gtccacgtgcgggcgctcagccggttccagaccgaccgcgaggcgcgcgagaccatcgcc
ggtctcgccgacggcaccgtcgacatggtcatcggcacccaccggatcctcaccgagaag
gtctccttcaaggacctggggctcatggtcatcgacgaggagcagcggttcggcgtcgag
cacaaggatgcgctgaagaagctcaagaccaacgtcgacatcctcgcgatgagcgcgacc
ccgatcccgcgctcgctcgagatggccgtcaccggcatccgcgagatgtccacgctcgcg
acgccgccggaggaccggcaccccatcctcaccttcgtcgggccccactccgaccagcag
gtcgccgcagcgatccgccgcgagatgctgcgcgagggccaggtgttcttcgtgcacaac
cgggtctcctcgatcaaccgggtcgcggcgcacctggctgaactcgtgcccgaggcgcgc
atcgccgtcgcacacggccagctcaacgagcacatgctggagcagatcgtcgtcgacttc
tgggagcgcaggttcgacgtgctcgtctcgaccaccatcatcgagaccggcctcgacatc
tcgaacgcgaacacgatcatcatcgaccgcgccgacaagtacgggctcagccagctgcac
cagctgcgcgggcgggtcgggcgcgggcgcgagcgcgcgtacgcgtacttcctctacgac
cccgcgaagccgctctccgagaccgcgcacgaccggctctcgaccatcgccgcgaacaac
gagctcggcggcggcatgcagatcgccctgaaggacctcgagatccgcggcgccggcaac
ctgctcggcgcagagcaggccgggcacatcgccggcgtcggattcgacctctacctgcgc
atgatcggcgaggcggtgaacgcgttccgcggcgacgtcgccgaggggcagaccgagctc
cggctcgaactgcccgtcgacgcgcacatccccgacgactacgtcgacagcgagcggctg
cgactcgaggcgtaccagaagctctccgccgcgagcggccccgccgcgaaggacggcgcg
atcgacctggtcgtcgaggaactcgtcgaccggtacggcgacctgcccgaacccgtcgag
catctcgtcgcggtctcgcgcctgcggcggaaggcgcagctcgccgggctctccgacgtc
atcgcgaccgggtcgaaactgcgcatcgcgcccgcgaagctgcccgattcgcgccgcgtg
cggctcgagcggatgtacccgggcgcgaagctgttcccgcagaacgacgtcgcactcgtg
ccgttcccgacgcccggcggcgaggcgcccggcgacggcgacctcatcgcgtgggtgtcg
aacctcatcggtgcgatcttccccgccgagcagcccgcggaggccgtcaccggctga
DBGET
integrated database retrieval system
