Agromyces marinus: DSM26151_21100
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Entry
DSM26151_21100 CDS
T08161
Name
(GenBank) hypothetical protein
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
amau
Agromyces marinus
Brite
KEGG Orthology (KO) [BR:
amau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amau03019
]
DSM26151_21100
Enzymes [BR:
amau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
DSM26151_21100
Messenger RNA biogenesis [BR:
amau03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
DSM26151_21100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_19
AAA_22
T2SSE
HA2_N
nSTAND3
ResIII
SLFN-g3_helicase
NACHT
AAA_23
FtsK_SpoIIIE
AAA_30
Ploopntkinase3
UvrD-helicase
PhoH
Zeta_toxin
Motif
Other DBs
NCBI-ProteinID:
UIP59209
LinkDB
All DBs
Position
2263396..2267391
Genome browser
AA seq
1331 aa
AA seq
DB search
MPAPVPATITYPADLPVSGRRDDIARAIRDHQVVIVAGATGSGKTTQLPKICLELGRESI
AHTQPRRIAARTIAERVSHELGVELGDLVGYQVRFTDRASEATRIKVMTDGILLNEIHRD
RDLRRYDTIIIDEAHERSLNIDFLLGYLKRLLPRRPDLRVIITSATIDPESFAAHFAGGS
GEPAPIIEVSGRTYPVEVRYRPLVAESAGSGSGEGDDDEGAAAEDRDVQRGILDALDELG
REAPGDVLVFLSGESEIRDAEAAVRAHAQRRGAADVTEVLPLYGRLSSADQHRVFEPSKI
PGLRRRVVLATNVAETSLTVPGIRYVIDAGTARISRYSARSKVQRLPIEPISQASANQRS
GRSGRTSDGIAIRLYSEDDFDGRPEFTDPEVLRTNLAAVILQMASLGLGAVEDFPFLTPP
DARGIRDGIDLLRELGAIDEADAAAGPQLTRVGRQLARLPIEPRFARMVLESKAQGVSRD
VLAIVAGLTIQDPRERPLERREQADELHRRFVDPTSDFLTLLNLWNHLEQQQRELSGSAF
RRMCRNEFLNYLRVREWQDLYRQLVRLAKPLGLHVASEAGPPNPDGIHRALLAGLLSHIG
IRDDSRTGSGRGGAGGQRDGERRGRRPQAEFLGARNARFVAFPGSALAKKPPAAIMAAEL
VETSRLFARTAAAIDPAWAEQLAGPLAKRSFSAPRWERRQGSAVADEKVLLFGVPIIPKR
RIQLARVDAPLARELFIRHALVEEDWDFSRLDKRVFAFVRRNRELRRELGELEERTRRRD
VLAGDAAVVAFYELRVPADATDARAFERWWRAEHRRSPDLLTMSARDLVGEDDVHADDGF
PDRWRQGDQTLTLKYRFEPGAEDDGVSVVVPLVLLPRLEPSGFDWQVPGLRDELVTAMLR
TLPKVLRRQVVPAAEWAAKIGAELPEGPESGAARDAFADTVAAVVKRLTYAPVTAEDFDL
DRLPPHLRVTFRAVDERGRTVGAGKDLGELQSRLADRAGRAVAIAAGGLEPRADPAPGAD
ADGAERRDRSPRPRGAGARDAGPEARSGLTAWEWDELPEHVDTRQAGNLIRAYPALVDEG
GSVALRLVATEDERDRASRRGIRRLLILATPSPVAYVQEHLSNQEKLALASSAYAGPRAL
LDDCLAAVVDAELRERHPDGLLWTRTEFEAARDAVAGRVMDRMFETVALVSKVLVAAREA
DRAIAKASSLHLMAALADARTGLEGLVPSGFVSATGLDRLRHLPRYLEAVTVRVRRLQEN
PGRDRQLMTEFDQARTAFEKAGGTIPIDPEASARLVRVRWLLEELRVGLFAQELRTSETV
SVKRIARALTE
NT seq
3996 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcgcccgtccccgccacgatcacgtacccggccgacctgccggtcagcggtcga
cgcgacgacatcgcgcgcgccatccgcgaccaccaggtcgtcatcgtcgcgggcgcgacc
ggctcgggcaagaccacgcagctgccgaagatctgcctcgagctcgggcgcgagtcgatc
gcgcacacgcagccccgccgcatcgcggcgcggaccatcgccgagcgggtctcccacgaa
ctcggcgtcgagctcggcgacctcgtcggctaccaggtgcggttcaccgaccgagcgagc
gaggcgacgcgcatcaaggtcatgaccgacggcatcctcctcaacgagatccaccgcgac
cgcgacctgcgccgctacgacacgatcatcatcgacgaggcgcacgagcgcagcctcaac
atcgacttcctgctcggctacctcaagcggctcctcccccgccgccccgacctgcgcgtg
atcatcacgagcgcgacgatcgaccctgagagcttcgccgcgcacttcgccggcggctcg
ggcgagcctgccccgatcatcgaggtgtccgggcgcacctacccggtcgaggtgcggtac
cgcccgctcgtcgccgagtccgccgggtcgggctcgggcgagggcgacgacgacgagggc
gccgccgctgaggaccgcgacgtgcagcggggcatcctcgacgcactcgacgaactcggg
cgcgaagcgcccggcgacgtgctcgtgttcctctcgggcgagagcgagatccgcgacgcc
gaggccgcggtgcgggcgcacgcgcagcggcgcggcgcagccgacgtgaccgaggtgctg
cccctctacgggcggctctcctcggccgaccagcaccgcgtgttcgaaccgtcgaagatc
ccggggctccggcgcagggtcgtcctcgcgacgaacgtcgccgagaccagcctcacggtg
cccggcatccgctacgtcatcgacgcgggcaccgcgcgcatcagccggtactcggcgcgc
tcgaaggtgcagcggctcccgatcgagccgatctcgcaggcctcggcgaaccagcgctcg
ggccgttcggggcgtacgagcgacggcatcgccatccgcctgtactccgaggacgacttc
gacggccgccccgaattcaccgaccccgaggtcctgcgcaccaacctcgccgccgtcatc
ctgcagatggcctcgctcgggctcggcgcggtcgaggactttccgttcctcaccccgccg
gatgcccgcggcattcgcgacggcatcgacctcctgcgcgagctcggggcgatcgacgaa
gcggatgccgcggccggcccgcaactgacccgtgtcggccgccagctcgcccgcctgccg
atcgaaccccggttcgcgcgcatggtgctcgagtcgaaggcgcagggcgtgagccgcgac
gtgctcgcgatcgtcgcgggcctgacgatccaggacccgcgcgagcgcccgctcgaacgc
cgcgagcaggccgacgagctgcatcgccggttcgtcgacccgacgagcgacttcctgacg
ctcctgaacctctggaaccacctcgagcagcagcagcgcgagctctcgggcagcgcgttc
cggcgcatgtgccggaacgagttcctcaactacctccgcgtgcgcgaatggcaggacctg
taccgtcagctcgtgcgcctggcgaagccgctcgggctgcacgtcgcgagcgaggcgggc
ccaccgaaccccgacggcatccaccgcgcactgctcgcgggcctgctctcgcacatcggc
atccgcgacgacagccgcaccgggagcggccgcggcggcgccggcggccagcgcgacggg
gaacgccgcgggcgccgccctcaggccgagttcctcggcgcgcgcaacgcgcgcttcgtg
gcgttcccgggatcggcactggcgaagaagccgccggccgcgatcatggccgccgaactc
gtcgagacgagccgcctgttcgcccgcaccgccgccgcgatcgatccggcgtgggccgag
cagctcgccggcccgctcgcgaagcgctcgttctcggccccgcgctgggagcgacgccag
gggtccgcggtcgccgacgagaaggtgctgctgttcggcgtgccgatcatcccgaagcgc
cgcatccagctcgcacgcgtcgacgccccgctcgcgcgggagctgttcatccggcacgcg
ctcgtcgaggaggactgggacttcagccggctggacaagcgggtgttcgccttcgtccgc
cgcaaccgcgagctgcgccgggagctcggcgaactcgaggagcggacgcgccgtcgcgac
gtgctcgcgggcgacgcggcggtcgtcgcgttctacgagctgcgggtcccggcggatgcc
accgacgcgcgggcgttcgaacgctggtggcgcgccgagcaccggcgcagccccgacctg
ctcacgatgagcgcgcgcgacctcgtcggcgaggacgacgtgcacgccgacgacgggttc
cccgaccggtggcgccagggcgaccagacgctgaccctgaagtaccggttcgagccgggc
gccgaggacgacggcgtgagcgtggtcgtcccgctcgtgctgctgccgcgactcgagccg
tccggattcgactggcaggtgccggggctgcgcgacgagctcgtcaccgcgatgctccgg
accctgccgaaggtgctgcgccgccaggtcgtgcccgctgcggagtgggcggcgaagatc
ggggcggagcttcccgagggtccggagtcgggtgcggcgcgcgacgcgttcgccgacacc
gtcgcggccgtcgtcaagcggctcacgtacgccccagtcacggcggaggacttcgacctg
gatcggcttccgccgcacctgcgcgtgacgttccgggcggtcgacgaacgcgggcgcacg
gtcggcgcgggcaaggacctcggcgagctgcagtcgcggctcgccgaccgggccggccgc
gcagtggcgatcgcagcgggcgggctcgagccgcgggccgatccagcgccgggcgcggat
gccgacggcgcggagcgccgggatcgatcgccccggccacggggtgcgggcgcacgcgac
gcgggccccgaggcgcggtccggtctcacggcctgggagtgggacgagctgcccgagcac
gtcgacacccgccaggccggcaacctgatccgggcgtaccccgccctggtcgacgagggc
ggctcggtcgcgctccggctcgtcgcgacggaggacgaacgcgatcgcgcgtcccgccgc
ggcatccgtcgtctgctgatcctcgccacgccgtccccggtcgcgtatgtgcaggagcac
ctctcgaaccaggagaagctcgcgctcgcctcgagcgcgtacgccgggccacgggccctg
ctcgacgactgcctcgcggcggtcgtcgacgccgaactccgcgaacggcaccccgacggg
ctgctgtggacccgcaccgagttcgaggccgcccgggacgccgtcgccggccgggtgatg
gaccgcatgttcgagaccgtcgcgctcgtgtcgaaggtcctcgtcgcagcccgcgaggcc
gatcgcgcgatcgcgaaggcgtcgagcctgcacctcatggcagcgctcgccgacgcccgc
acgggcctcgagggcttggtgccctcgggtttcgtgtcggccaccgggctcgaccggctc
cggcacctgccgcgctacctcgaggccgtcacggtgcgggtgcggcggctccaggagaac
cccggccgcgaccgccagctcatgaccgagttcgaccaggcccggacggccttcgagaag
gccggcggcacgatcccgatcgaccccgaggcatccgcccggctcgtccgggtccgctgg
ctgctcgaggaactgcgcgtggggctgttcgcgcaggagctgcgcacctccgagacggtc
tcggtcaagcggatcgcgagggccctgaccgagtga
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