Agromyces marinus: DSM26151_23760
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Entry
DSM26151_23760 CDS
T08161
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
amau
Agromyces marinus
Pathway
amau03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
amau00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DSM26151_23760 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amau03021
]
DSM26151_23760 (rpoC)
03400 DNA repair and recombination proteins [BR:
amau03400
]
DSM26151_23760 (rpoC)
Enzymes [BR:
amau01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DSM26151_23760 (rpoC)
Transcription machinery [BR:
amau03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DSM26151_23760 (rpoC)
DNA repair and recombination proteins [BR:
amau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DSM26151_23760 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF7491
Motif
Other DBs
NCBI-ProteinID:
UIP59469
LinkDB
All DBs
Position
complement(2545811..2549713)
Genome browser
AA seq
1300 aa
AA seq
DB search
MLDATTFDELRIGLATAEDIRKWSYGEVKKPETINYRTLKPEKDGLFGEQIFGPSRDWEC
ACGKYKRVRFKGIVCERCGVEVTKSSVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDM
APKDLEKVIYFAAYMVIDVDEDGRHQDMPGLENELRLEIKAIGDARDARIAELMTRKEEE
LAALEAEGAKADQRKRAEAAADKEMAGVRKSGDEQIAHLERVWEDFRTLKVGDLKPEDSV
FQELQDRFGMYFEAYMGAEAIKKRLEAFDLAAEADDLRLQIAEGKGQKKIRAIKRLRVVS
SFLTTGSSPAAMVLDVVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLRRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGTGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVIKRLIDLSHAQNIKAAKRMVERSR
PQVWDVLEEIIRERPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCAAFNADFDGDQ
MAVHLPLSVEAQAEARILMLASNNILKPSDGRPVTLPSQDMIIGLHHLTTEKAGAAGEGR
AFSSIAEAILAFDQNRPGELALDLGAQVKIRLEGIRFAEGQEPEGFEAGKPFLMETTLGR
AIFNEALPADYPYFNAQAGKSQISQIVNDLAERYPKTEVAATLDRIKDAGFRWATRSGVT
VALSDIVQLPQKREIVSKYEKQAAKVQSQFEKGLTTDLERRQELIQIWTKATDEVAKAMQ
EEFAADQDNTINRMVTSGARGNWLQVRNIAGMRGLVNNPKGEIIPRPIISSYREGLSVAE
YFIATHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREDDCGTSKGLELPIAAVDSTG
ALVRDPNVENSVFARSLATDAVDAKGEVVAEAGEDVGDVLIDKLVGAGVESIKVRSVLTC
ESAVGVCAKCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGSASADDITQ
GLPRVQELFEARTPKGASPIVEAPGRITIDETEKQRKVILTPDNGDEPIAYNVLKRSTLL
VEDGQHVELGQQLIVGTVDPKEVLRVKGVREVQKHLVNGVQDVYRSQGVPIHDKHIEVIV
RQMLRKVTVVDHGDTDLLPGELVDRSRYNEINRGALTEGRKTASARQEVMGITKASLATE
SWLSAASFQETTRVLTQAAMEGKSDPLVGLKENVIIGKLIPAGTGLGKYRSVSVEATEEA
KAERYPNRIFSDDASFKEGDLSFVDFDSFSSDDFTPGNYS
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
ttgctcgacgcaacgacgttcgatgagctccgtatcggcctggcgaccgccgaggacatc
cgcaagtggtcctacggcgaggtcaagaagcccgagaccatcaactaccgcacgctgaag
cccgagaaggacgggctcttcggcgagcagatcttcggacccagccgcgactgggagtgc
gcgtgcggcaagtacaagcgcgtgcgcttcaagggcatcgtctgcgagcggtgcggtgtc
gaggtcaccaagtcctcggtccgccgcgagcggatgggtcacatcgagctcgccgccccg
gtgacgcacatctggtacttcaagggcgtgccctcgcgcctcgggtacctgctcgacatg
gcgccgaaggacctcgagaaggtcatctacttcgccgcgtacatggtcatcgacgtggac
gaggacggccgccaccaggacatgccgggcctcgagaacgagctccgcctcgagatcaag
gccatcggcgacgcccgcgacgcgcgcatcgccgagctcatgacccgcaaggaggaggag
ctcgcggcactcgaggccgagggcgccaaggccgaccagcgcaagcgcgccgaggccgcc
gccgacaaggagatggccggcgtccgcaagtcgggcgacgagcagatcgcgcacctcgag
cgggtctgggaggacttccgcacgctgaaggtcggcgacctgaagcccgaggactcggtc
ttccaggagctccaggaccgcttcggcatgtacttcgaggcctacatgggcgccgaggcc
atcaagaagcgcctcgaggccttcgacctggctgccgaggcggacgacctccgcctgcag
atcgccgagggcaagggccagaagaagatccgcgccatcaagcgcctccgggtcgtcagc
tcgttcctcacgaccggcagctcgccggccgcgatggtgctcgacgtggttccggtgatc
ccgccggagctgcgcccgatggtgcagctcgacggcggtcgcttcgcgacctccgacctc
aacgacctctaccgtcgcgtgatcaaccgcaacaaccgcctccgtcgcctcctcgacctc
ggtgctcccgagatcatcgtgaacaacgagaagcggatgctgcaggaggccgtcgacgcg
ctgttcgacaacggccgtcgtggtcgcccggtgaccggcaccggcaaccgcgccctcaag
tccctgagcgacatgctcaagggcaagcagggtcggttccgccagaacctgctcggcaag
cgcgtggactactcgggccgttcggtcatcgtcgtgggtccgcagctcaagctccaccag
tgcggcctgcccaagcagatggcactcgagctgttcaagccgttcgtcatcaagcgcctc
atcgacctgagccacgcgcagaacatcaaggccgccaagcgcatggtcgagcgttcgcgc
ccgcaggtgtgggacgtgctcgaggagatcatccgcgagcgccccgtgctgctgaaccgt
gcgcccacgctgcaccgcctcggcatccaggcgttcgagccgcagctcgtcgagggcaag
gccatccagctccacccgctcgtctgcgccgcgttcaacgcggacttcgacggcgaccag
atggccgtccacctgcccctgtcggtcgaggcgcaggccgaggcccgcatcctcatgctg
gcgtcgaacaacatcctcaagccgtcggacggccgcccggtgaccctgccctcgcaggac
atgatcatcggcctgcaccacctgacgaccgagaaggccggcgccgcaggtgagggccgt
gcgttctcgtcgatcgccgaggcgatcctcgcgttcgaccagaaccgtccgggcgagctc
gcgctcgacctcggcgcgcaggtcaagattcgcctcgagggcatccgcttcgcggagggc
caggagcccgagggcttcgaggccggcaagccgttcctgatggagacgaccctgggtcgc
gccatcttcaacgaggcgctgcccgcggactacccgtacttcaacgcgcaggccggcaag
tcgcagatctcgcagatcgtcaacgacctcgccgagcgctacccgaagaccgaggtggcc
gcgacgctcgaccgcatcaaggacgccggcttccgttgggcgacccggtcgggcgtgacc
gtcgcgctctccgacatcgtccagctcccgcagaagcgcgagatcgtgtcgaagtacgag
aagcaggccgcgaaggtccagtcgcagttcgagaagggtctcacgaccgacctcgagcgt
cgtcaggagctcatccagatctggaccaaggcgaccgacgaggtcgcgaaggccatgcag
gaggagttcgccgcagaccaggacaacaccatcaaccgcatggtgacctcgggtgcgcgt
ggtaactggctgcaggtgcgcaacatcgccggcatgcgaggcctcgtgaacaacccgaag
ggcgagatcatcccgcgtccgatcatctcctcgtaccgcgaggggctgtcggtggccgag
tacttcatcgccacgcacggtgcccgcaagggcctggccgacacggcgctccgtacggcc
gactcgggctacctcacgcgtcgtctggtcgacgtctcgcaggacgtcatcatccgcgag
gacgactgcggcacgtcgaagggcctcgagctgccgatcgccgcggtcgactcgaccggt
gcgctcgtgcgcgacccgaacgtcgagaactcggtgttcgcgcgttcgctcgcgaccgac
gccgtggacgccaagggcgaggtcgtcgccgaggcgggcgaggacgtgggcgacgtgctc
atcgacaagctcgtcggcgccggcgtcgagtcgatcaaggtccgctcggtgctcacctgc
gagtcggccgtcggcgtctgcgcgaagtgctacggccgttcgctcgcgaccggcaagctc
gtcgacatcggcgaggccgtcggcatcatcgcggcccagtcgatcggcgagcccggcacg
cagctgaccatgcgtaccttccacaccggtggttcggcctcggccgacgacatcacgcag
ggtcttccccgcgtgcaggagctcttcgaggcccgcacccccaagggtgcgtcgcccatc
gtcgaggcccccggccgcatcacgatcgacgagaccgagaagcagcgcaaggtcatcctc
acgcccgacaacggcgacgagccgatcgcgtacaacgtgctcaagcgttcgacgctgctc
gtcgaggacggccagcacgtcgaactcggccagcagctgatcgtcggcacggtcgacccg
aaggaggtcctccgggtcaagggcgtgcgcgaggtgcagaagcacctcgtcaacggcgta
caggacgtgtaccgctcgcagggcgtgccgatccacgacaagcacatcgaggtcatcgtg
cgccagatgctccgcaaggtcaccgtggtcgaccacggcgacacggacctgctgccgggc
gagctcgtcgaccgttcgcggtacaacgagatcaaccggggcgcgctcaccgagggccgg
aagacggcgtcggcgcgtcaggaggtcatgggcatcaccaaggcctcgctcgcgaccgag
tcgtggctgtcggccgcgtccttccaggagacgacccgcgtgctcacgcaggccgccatg
gagggcaagtccgacccgctcgtcgggctcaaggagaacgtgatcatcggaaagctgatc
cctgcgggtaccggcctcggcaagtaccgcagcgtctcggtcgaggcgacggaggaggcg
aaggcggagcgctacccgaaccgcatcttctccgacgacgcgtcgttcaaggagggcgac
ctcagcttcgtcgacttcgactcgttctcgagcgacgacttcacccccggcaactacagc
tga
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