Agromyces mangrovi: GCM10025877_02540
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Entry
GCM10025877_02540 CDS
T09181
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
amav
Agromyces mangrovi
Pathway
amav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GCM10025877_02540 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amav03019
]
GCM10025877_02540 (deaD)
03009 Ribosome biogenesis [BR:
amav03009
]
GCM10025877_02540 (deaD)
Enzymes [BR:
amav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GCM10025877_02540 (deaD)
Messenger RNA biogenesis [BR:
amav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GCM10025877_02540 (deaD)
Ribosome biogenesis [BR:
amav03009
]
Prokaryotic type
rRNA helicases
GCM10025877_02540 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
HEM4
UvrA_inter
Flavi_DEAD
RecX_HTH1
Motif
Other DBs
NCBI-ProteinID:
BDZ63316
LinkDB
All DBs
Position
complement(275799..277610)
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AA seq
603 aa
AA seq
DB search
MTSSDAHVEAAAPEEPAATTFSDLGLDGEVLKALDDVGYETPSAIQAATIPTLLSGRDVV
GLAQTGTGKTAAFALPILARLDVSQKQPQALVLAPTRELALQVCEAFEKYAARMRGVHIL
PVYGGQGYGVQLSALRRGVHIVVGTPGRIMDHLDKGTLDLSELKYLVLDEADEMLKMGFA
EDVETILAETPDDKQVALFSATMPAAIRRISQQYLNLPEEITVKAKTQTSANITQRYLVV
SYAQKVDALTRILEVENFEGMIIFVRTKNVTEELAEKLRARGYSAQAINGDVPQAQRERT
VNQLKSGKLDILVATDVAARGLDVERISHVVNFDIPTDSEPYVHRIGRTGRAGRSGDAIS
FVTPRERGLLNRIEKATRQPIEQMQLPSVDDVNVTRLARFDDRITAALAQNERIDGFRDI
IAHYVRHHDVPEADVAAALAVVAQGDSPLLMEPEPERPRRERDDRPARDRDGGERGARPR
RGSGKPMETYRIAVGKRHRVEPRQIVGALANEGGLQRDDFGAIQIRPAFSLVELPADLPG
DVLDRLSGTRISGKLIELRPDTGAPKRRDRDDRGPRRDWDDRGSRKSRDDRDDRPLRKPR
HKG
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
gtgacttcaagcgacgcccacgtcgaggcagcggctcccgaagagccggccgcgaccacc
ttctccgacctcggactcgacggcgaggtgctgaaggcactcgacgacgtcggctacgag
accccctccgcgatccaggcggcgaccatcccgaccctcctgagcgggcgcgacgtcgtc
ggcctcgcccagaccggcaccggcaagacggcggcgttcgcgctgccgatcctcgcgcgg
ctcgacgtgtcgcagaagcagccgcaggcgctcgtgctcgcgccgacgcgcgagctcgcc
ctgcaggtctgcgaggcgttcgagaagtacgccgctcgcatgcgcggcgtgcacatcctg
cccgtctacggcggccagggctacggcgtgcagctgtccgcgctgcgccgcggcgtgcac
atcgtcgtcggcaccccgggccgcatcatggaccacctcgacaagggcacgctcgacctg
tcggagctcaagtacctcgtgctcgacgaggccgacgagatgctgaagatgggcttcgcg
gaggacgtcgagacgatcctcgccgagacgccggacgacaagcaggtcgcactgttctcg
gcgaccatgccggccgcgatccgccgcatctcgcagcagtacctgaacctccccgaggag
atcacggtcaaggcgaagacccagaccagcgcgaacatcacgcagcgctacctggtcgtc
tcgtacgcccagaaggtcgatgcgctcacccgcatcctcgaggtcgagaacttcgagggc
atgatcatcttcgtccgcaccaagaacgtcaccgaggagctcgccgagaagctccgggcg
cgcggctactcggcgcaggcgatcaacggcgacgtgccgcaggcgcagcgcgagcgcacg
gtcaaccagctgaagtcgggcaagctcgacatcctggtggcgacggatgtcgcggcgaga
ggcctcgacgtcgagcgcatcagccacgtggtgaacttcgacatcccgaccgacagcgag
ccgtacgtgcaccgcatcggccgcaccggccgcgccggtcgctccggtgacgcgatcagc
ttcgtgaccccgcgcgagcgcggcctgctcaaccgcatcgagaaggcgacccgccagccg
atcgagcagatgcagctgccgagcgtcgacgacgtgaacgttacccgtctcgcgcggttc
gacgaccgcatcaccgctgccctcgcgcagaacgagcgcatcgacgggttccgcgacatc
atcgcccactacgtgcgccaccatgacgtgcccgaggccgacgtggccgcggcgctcgcc
gtggtcgcgcagggcgactcgcccctgctcatggagcccgagcccgagcgcccgcgccgc
gagcgcgacgaccgtcccgcgcgcgaccgcgacggcggcgaacggggtgcgcgcccgcgt
cgcggcagcggcaagcccatggagacctaccgcatcgcggtcggcaagcgccaccgcgtc
gagccccgccagatcgtcggcgcgctcgccaacgagggcgggctgcagcgcgacgacttc
ggcgcgatccagatccgcccggcgttctcgctcgtcgagctgcccgccgacctgcccggc
gacgtgctcgaccggctctccggcacgcgcatctcgggcaagctcatcgagctgcgtccc
gacacgggcgccccgaagcgccgcgaccgcgacgaccgcggcccgcgccgcgactgggac
gaccgtggatcccggaagtcgcgcgacgaccgcgacgaccgaccgctgcgcaagccccgc
cacaaggggtag
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