Agromyces mangrovi: GCM10025877_04780
Help
Entry
GCM10025877_04780 CDS
T09181
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
amav
Agromyces mangrovi
Pathway
amav03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
amav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GCM10025877_04780 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amav03400
]
GCM10025877_04780 (mfd)
Enzymes [BR:
amav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GCM10025877_04780 (mfd)
DNA repair and recombination proteins [BR:
amav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GCM10025877_04780 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
DUF3638
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BDZ63540
LinkDB
All DBs
Position
complement(511259..515041)
Genome browser
AA seq
1260 aa
AA seq
DB search
MILQGFLTALSRASTFDEALAQASHNAEFSALPGLDAPLAAGLLTRRIEADEPPALLLIA
PTSREAESLRGALAPYLPDDTELLEFPAWETLPHERLSPSAETVGRRLHAIRRMAEWTES
ERPRHPLIITASVRAALQPVADNLATLEPIRLAAGSRGHDLARIAEQLVDLAYSRVDMVS
RRGEFAVRGGILDVFPPTADHPLRIEFFGDEVDQLRAFSVADQRSLPEPIDEAVLAPSRE
LLLTPPVRQRAREMVHEFPGLAGMLEKVSEGIPVEGMESLAPALLERLVPITHYLPEGAA
IAVISPERVESRAVSLAETNQEFLSAAWSAATAGAAAPIDLASGDFLSIAELREDALFSA
PGEPDPGRVWWTFSGFDMGDAVDVVGDGTGAGRADASGGTSPANASATSAGGFAATGGGS
SAGPAASAASPGTALRVLATPVPSFHGNVDGAVAHVAARLRDGWSLVIAAAGSGLVERAR
DVLAEHELAGRIVDHVPADPEPGVAYLVQADATTGFDLPDAKLGLISEAEFYGRAAGYDA
RQGKKLASRRRNVVDPLQLKPGDHVVHQTHGIGRFVEMVQREVAAGARPTGPSRTAGVQQ
APTIVREYLVLEYAPSKRGQAGDRLYVPTDQLDLLSRYVGGEAPSLSKMGGSDWAQAKGK
ARRAVRDIAVELVKLYSARMAAKGHAFGPDTPWQHELEEAFPYAETPDQLQTIDEVKADM
ERPIPMDRLLAGDVGFGKTEVAVRAAFKAIQDGKQVAMLVPTTLLVKQHLETFQERFAGF
PVRVRALSRFQTDKEAKEAIAGLADGSVDMVIGTHRLLTEKITFKDLGLLIIDEEQRFGV
EHKDRIKQLKTNVDILAMSATPIPRTLEMAVTGIREMSTLATAPEDRHPILTFVGPYSEK
QVGAAIRREMLREGQVFFVHNRVSSINRVAAQLAELVPEARIAVAHGQLNEHVLEQIVVD
FWERKFDVLVSTTIIETGLDISNANTIIIDRADKYGLSQLHQLRGRVGRSRERAYAYFLY
DEQKPLSETAHDRLSTIAANNELGSGMQVALKDLEIRGAGNLLGAEQAGHIAGVGFDLYL
RMIGEAVSAFRGDVAEGQTELRLELPVDAHIPDAYVDSERLRLEAYQKLSAASGPNAKDD
QIDLVVEELSDRYGTPPEEVANLVLVSRLRRRAQRAGLGELVATGSKLRIGPARLPDSKL
VRMQRLYPGAKHFPQNDVILVPLPVKHGEPLQDAALIAWVGDLIGALYPEPEPVAAAAQG
NT seq
3783 nt
NT seq
+upstream
nt +downstream
nt
gtgatcctccagggctttctcacggcgctttcgcgcgcctccacgttcgacgaagccctc
gcgcaggcctcgcacaacgcggagttctcggcgctcccgggactcgacgcaccgctcgcc
gccggcctcctcacccgccgcatcgaggccgacgaaccgcccgcactgctgctcatcgca
cccaccagccgcgaggccgaatcgctccgcggcgcactcgccccgtacctccccgacgac
accgaactcctcgagttccccgcctgggagacgctcccgcacgaacgcctgagccccagt
gccgagaccgtcggccgcagactccacgccatccgccgcatggccgagtggacggaatcc
gagcgcccgaggcatccgctcatcatcaccgcctcggtccgcgccgccctgcagcccgtc
gccgacaacctcgcgaccctcgaaccgatccgcctcgccgcgggcagccgcggccacgac
ctcgcccgcatcgccgagcagctcgtcgacctcgcctactcgcgcgtcgacatggtctcg
cgccgcggcgagttcgccgtccgcggcggcatcctcgacgtcttcccgccgaccgccgac
cacccgctccgcatcgagttcttcggcgacgaggtcgaccagctccgcgccttctcggtc
gccgaccagcgctcactgcccgaacccatcgacgaggccgtcctcgcccccagccgcgag
ctgctgctcaccccgcccgtgcgccagcgcgcccgtgagatggtgcacgagttccccggc
ctcgcgggcatgctcgagaaggtctccgagggcatcccggtcgagggcatggagtcgctc
gccccggcactgctcgaacgactcgtgccgatcacgcactacctgcccgagggcgccgcc
atcgcggtcatttcgcccgaacgcgtcgagagccgcgcggtcagcctcgccgagacgaac
caggagttcctctccgcagcctggagcgccgccaccgccggcgccgccgcccccatcgac
ctcgcctcgggcgacttcctgagcatcgccgaactccgcgaggacgccctcttcagcgca
ccgggcgaacccgaccccggtcgcgtctggtggaccttcagcggcttcgacatgggcgac
gccgtcgacgtcgtgggtgacggcaccggtgcagggcgagcggatgcctccggcggcacc
agccccgccaacgcgagcgcgacctcggccggtgggttcgcggccaccggtggcgggtcg
agcgccggccccgcagcatccgccgcttctcccggcaccgccctgcgcgtgctcgccacg
cccgtgccgagcttccacggcaacgtcgacggcgccgtcgcgcacgtcgccgcccgcctc
cgcgacggctggagcctcgtgatcgccgccgccggatccggcctcgtcgagcgcgcccgc
gacgtgctcgccgagcacgaactcgccggccgcatcgtcgaccacgtccccgcagacccc
gagcccggtgtcgcctacctcgtgcaggccgacgcgaccaccggcttcgacctgcccgac
gcgaagctcggcctcatctccgaagccgagttctacggccgcgccgccggctacgacgcc
cgccagggcaagaagctcgcctcccgccgccgcaacgtcgtcgacccgctccagctgaag
cccggcgaccacgtcgtgcaccagacccacggcatcggccgcttcgtcgagatggtgcag
cgcgaggtcgccgccggcgcccgccccaccggccccagccgcaccgcaggcgtgcagcag
gcgccgaccatcgtgcgcgagtacctggtgctcgagtacgcacccagcaagcgcggtcag
gccggcgaccgcctctacgtgccgaccgaccagctcgacctgctcagccgctacgtcggc
ggcgaggcgccgtcgctcagcaagatgggcggcagcgactgggcgcaggccaagggcaag
gcccgccgcgccgtgcgcgacatcgccgtcgagctcgtgaagctctactcggcgcgtatg
gcggcgaagggccacgcgttcggccccgacaccccgtggcagcacgagctcgaggaggcg
ttcccgtacgccgagacccccgaccagctgcagaccatcgacgaggtgaaggccgacatg
gagcggcccatcccgatggaccgcctgctcgccggcgacgtcggcttcggcaagaccgag
gtcgcggtgcgcgccgcgttcaaggcgatccaggacggcaagcaggtcgccatgctcgtg
ccgaccacgctgctcgtgaagcagcacctcgagacgttccaggagcggttcgccggcttc
ccggtgcgcgtgcgcgcactcagccggttccagacggacaaggaggcgaaggaggcgatc
gccggcctcgccgacggcagcgtcgacatggtcatcggcacgcaccgcctgctcaccgag
aagatcacgttcaaggacctgggcctcctcatcatcgacgaggagcagcgcttcggcgtc
gagcacaaggaccgcatcaagcagctgaagacgaacgtcgacatcctcgcgatgagcgcc
acacccattcctcgcacgctcgagatggcggtcacgggcatccgcgagatgtcgaccctc
gcgacggcgcccgaggaccggcatccgatcctcaccttcgtcggcccgtactccgaaaag
caggtcggcgccgcgatccgccgcgagatgctgcgcgagggccaggtgttcttcgtgcac
aaccgcgtctcgtcgatcaaccgcgtcgccgcccagctcgccgagctcgtgcccgaggca
cgcatcgcggtcgcccacggccagctcaacgagcacgtgctcgagcagatcgtcgtcgac
ttctgggagcgcaagttcgacgtgctcgtctcgaccaccatcatcgagaccggcctcgac
atctcgaacgcgaacacgatcatcatcgaccgcgccgacaagtacggcctcagccagctg
caccagctgcgcggccgcgtcggccgcagccgcgagcgcgcctacgcgtacttcctctac
gacgagcagaagccgctcagcgagaccgcgcacgaccgcctctcgaccatcgccgcgaac
aacgagctcggcagcggcatgcaggtggccctgaaggacctcgagatccgcggcgcgggc
aacctgctcggcgccgagcaggccggccacatcgccggcgtcggcttcgacctgtacctg
cgcatgatcggcgaggcggtgtcggcgttccgcggcgacgtggccgaggggcagaccgag
ctgcggctcgagctgccggtcgacgcgcacatccccgacgcgtacgtcgacagcgagcgg
ctgcgcctcgaggcgtaccagaagctctccgcggcgagcggcccgaatgcgaaggacgac
cagatcgacctcgtggtcgaggaactctccgaccgctacggcactccgcccgaggaggtc
gcgaatctcgtgctcgtctcgcgcctgcgccgtcgtgcccagcgcgccggcctcggcgag
ctcgtcgcgaccggctcgaagctccgcatcggccccgcgcgcctgcccgactccaagctc
gtcagaatgcagcggctctacccgggcgcgaagcacttcccgcagaacgacgtcattctc
gtgccgctgcccgtcaagcacggcgaaccgctgcaggacgcggccctcatcgcctgggtc
ggcgacctcatcggcgcgctctaccccgagccggagccggtggccgcggcggcacagggc
tga
DBGET
integrated database retrieval system
