Agromyces mangrovi: GCM10025877_08410
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Entry
GCM10025877_08410 CDS
T09181
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
amav
Agromyces mangrovi
Pathway
amav03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
amav00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GCM10025877_08410 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amav03021
]
GCM10025877_08410 (rpoC)
03400 DNA repair and recombination proteins [BR:
amav03400
]
GCM10025877_08410 (rpoC)
Enzymes [BR:
amav01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GCM10025877_08410 (rpoC)
Transcription machinery [BR:
amav03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GCM10025877_08410 (rpoC)
DNA repair and recombination proteins [BR:
amav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GCM10025877_08410 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF7491
DUF3150
Motif
Other DBs
NCBI-ProteinID:
BDZ63903
LinkDB
All DBs
Position
complement(879356..883252)
Genome browser
AA seq
1298 aa
AA seq
DB search
MLDATTFDELRIGLATAEDIRRWSYGEVKKPETINYRTLKPEKDGLFGEQIFGPSRDWEC
SCGKYKRVRFKGIVCERCGVEVTKSSVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDM
APKDLEKVIYFAAYMIIDIDEEGRHADLPGLENELRLEIKTIGDQRDARIAELMTRKEEE
LAQLEADGAKSDQKKRAEAAADKEMAGVRKSADEQVAHLERVWDEFRTLKVGDLKPEDPV
FHELQDRFGIYFDAYMGAEAIKQRLESFDLKAEAEDLHLQIAEGKGQKKIRAIKRLRVVN
SFLATGNSPAAMVLDVVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLRRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGTGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVIKRLIDLSHAQNIKAAKRMVERSR
PQVWDVLEEIIRERPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCAAFNADFDGDQ
MAVHLPLSVEAQAEARILMLASNNILKPSDGRPVTLPSQDMIIGLHHLTTEKEGVAGEGR
AFSSIAEAILAFDQNSPLRTELDLNAKVKIRLDGLHFAEGEAPEGFEPGKPFALETTLGR
ALFNEALPTDYPYFNAQAGKGQISSIVNDLAERYPKVEVAATLDRIKDAGFRWATRSGVT
VALSDVVAPPQKAEIVAKHEKEAAKVQAQFEKGLTTDLERRQELIQIWTKATDEVAQAMR
ENFPEDNTINRMVSSGARGNWLQVRNIAGMRGLVNNPKGEIIPRPIISSYREGLTVAEYF
IATHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTTRGLAFTIAEADEAGVL
REAADVDNSVYSRNLASDAVDATGEVLAEAGADVGDVLIDRLVKAGVESIKVRSVLTCES
SVGVCAKCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGSASADDITQGL
PRVQELFEARTPKGASPIAEAPGKITIDETEKQRKVILTPDNGDEPIAYNVLKRSTLLVE
DGQHVELGEQIIVGTVDPKEVLRVKGVRAVQKHLVEGVQDVYRSQGVPIHDKHIEVIVRQ
MLRKVTVVDHGDTDLLPGELVDRSRYNEINRASLTEGKKTASARQEVMGITKASLATESW
LSAASFQETTRVLTQAAMEGKSDPLVGLKENVIIGKLIPAGTGLGKYRNVTVEATEEAKA
ERYPNRIFSEDAVFSEGDLSFVDFDSFSSDDFTPGNYQ
NT seq
3897 nt
NT seq
+upstream
nt +downstream
nt
ttgctcgacgcaaccacttttgacgagcttcgcatcggcctggccaccgccgaggacatc
cgccgctggtcgtacggcgaggtcaagaagcccgagacgatcaactaccgcacgctcaag
cccgagaaggacggcctcttcggcgagcagatcttcggaccgagccgcgactgggagtgc
tcgtgcggcaagtacaagcgcgtccgcttcaagggcatcgtctgcgagcgctgcggtgtc
gaggtcacgaagtcgtccgtgcgccgtgagcgcatgggccacatcgagctggccgcgccc
gtcacgcacatctggtacttcaagggcgtgccctcgcgcctcgggtacctgctcgacatg
gctccgaaggacctcgagaaggtcatctacttcgcggcgtacatgatcatcgacatcgac
gaggagggtcgccacgccgacctgcccgggctcgagaacgagctccgcctcgagatcaag
acgatcggcgaccagcgcgacgcgcgcatcgccgagctcatgacccgcaaggaggaggag
ctcgcgcagctcgaggccgacggtgccaagagcgaccagaagaagcgcgccgaggccgcc
gccgacaaggagatggccggcgtccgcaagtcggccgacgagcaggtcgcgcacctcgag
cgcgtctgggacgagttccgcacgctgaaggtcggcgacctgaagcccgaggacccggtg
ttccacgagctccaggaccgcttcggcatctacttcgacgcctacatgggcgccgaggcg
atcaagcagcggctcgagagcttcgacctgaaggccgaggcggaggacctgcacctgcag
atcgccgagggcaagggccagaagaagatccgcgccatcaagcgcctgcgcgtcgtcaac
tcgttcctcgccaccggcaactcgccggccgcgatggtgctcgacgtcgtcccggtcatc
ccgccggagctgcgcccgatggtgcagctcgacggtggccgcttcgccacgagcgacctg
aacgacctgtaccgccgcgtgatcaaccgcaacaaccgcctccgtcgactgctcgacctc
ggcgcgcccgagatcatcgtgaacaacgagaagcggatgctccaggaggccgtcgacgcg
ctgttcgacaacggccgtcgtggtcgcccggtcaccggtaccggcaaccgtgcgctcaag
tcgctgtccgacatgctgaagggcaagcagggccggttccgccagaacctgctcggcaag
cgcgtcgactactcgggccgttcggtcatcgtggtcggcccgcagctgaagctgcaccag
tgcggcctgcccaagcagatggcgctcgagctgttcaagccgttcgtcatcaagcgcctg
atcgacctgagccacgcgcagaacatcaaggccgccaagcgcatggtggagcgttcgcgc
ccgcaggtgtgggacgtgctcgaggagatcatccgcgagcgccccgtcctgctgaaccgc
gcgcccacgctgcaccgcctcggcatccaggcgttcgagccgcagctcgtcgagggcaag
gccatccagctgcacccgctcgtctgcgccgcgttcaacgcggacttcgacggcgaccag
atggccgtgcacctgccgctgtcggtcgaggcgcaggccgaggcccgcatcctgatgctc
gcgtcgaacaacatcctgaagccgtcggacggccgtccggtgaccctgccctcgcaggac
atgatcatcggcctgcaccacctgacgaccgagaaggagggcgtcgccggtgagggccgt
gcgttctcgtcgatcgccgaggcgatcctcgcgttcgaccagaactcgccgctgcgcacc
gagctcgacctcaacgcgaaggtgaagatccgtctcgacgggctgcacttcgccgagggc
gaggcgcccgagggcttcgagcccggcaagccgttcgcactggagacgaccctcggtcgc
gccctcttcaacgaggcgctgccgacggactacccgtacttcaacgcgcaggccggcaag
ggccagatctcgtcgatcgtcaacgacctcgccgagcgctacccgaaggtggaggtcgca
gcgaccctcgaccggatcaaggacgccggcttccgctgggcgacccgctccggcgtgacc
gtcgccctctccgacgtcgtcgcacccccgcagaaggcggagatcgtggcgaagcacgag
aaggaggccgcgaaggtccaggcgcagttcgagaagggtctcacgaccgacctcgagcgt
cgtcaggagctcatccagatctggaccaaggccaccgacgaggtcgcccaggccatgcgc
gagaacttcccggaggacaacaccatcaaccgcatggtgtcctcgggtgctcgcggtaac
tggctgcaggtgcgcaacatcgccggtatgcgcggtctggtgaacaacccgaagggtgag
atcatcccgcgcccgatcatctcgagctaccgcgagggcctgaccgtggcggagtacttc
atcgccacgcacggtgcccgcaagggtctcgccgacaccgcgctccgcaccgcggactcg
ggctacctgacgcgtcgtctggtcgacgtctcgcaggacgtcatcatccgcgaggaggac
tgcggcacgactcgcggcctggccttcacgatcgccgaggccgacgaggcgggcgtgctc
cgcgaggcggccgacgtcgacaactcggtgtactcgcgcaacctggcatccgacgccgtc
gatgccacgggcgaggtgctggccgaggccggcgccgacgtgggcgacgtgctcatcgac
cgcctggtcaaggcgggcgtcgagtcgatcaaggtccgctcggtgctcacctgcgagtcg
agcgtcggcgtctgcgcgaagtgctacggccgttcgctcgcgaccggcaagctcgtcgac
atcggcgaggccgtcggcatcatcgcggcccagtcgatcggcgagcccggcacgcagctg
accatgcgtaccttccacaccggtggttcggcctcggccgacgacatcacgcagggtctg
ccccgcgtgcaggagctcttcgaggcccgcacccccaagggtgcgtcgccgatcgcggag
gcccccggcaagatcacgatcgacgagaccgagaagcagcgcaaggtgatcctcaccccc
gacaacggggacgagccgatcgcgtacaacgtgctcaagcgctcgaccctcctggtcgag
gacggccagcacgtcgagctcggcgagcagatcatcgtcggaacggtcgacccgaaggag
gtgctccgcgtcaagggcgtccgcgccgtgcagaagcacctcgtcgagggcgtgcaggac
gtgtaccgctcgcagggcgtgccgatccacgacaagcacatcgaggtcatcgtgcgccag
atgctgcgcaaggtcacggtcgtcgaccacggcgacaccgacctgctgccgggcgagctc
gtcgaccgcagccggtacaacgagatcaaccgcgcgtcgctgaccgagggcaagaagacc
gcctcggcccgccaggaggtcatgggcatcaccaaggcctcgctcgcgaccgagtcgtgg
ctgtcggccgcgtccttccaggagacgacccgcgtgctcacgcaggccgccatggagggc
aagtccgacccgctggtcggcctcaaggagaacgtcatcatcggcaagctgatcccggcc
ggtaccgggctcggcaagtaccgcaacgtgacggtcgaggcgaccgaggaggcgaaggcg
gagcgctacccgaaccgcatcttctccgaggacgcggtcttctccgagggcgacctgagc
ttcgtcgacttcgactcgttctcgagcgacgacttcacccccggcaactaccagtag
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