Ahrensia marina: ABWH92_13855
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Entry
ABWH92_13855 CDS
T10849
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
amax Ahrensia marina
Brite
KEGG Orthology (KO) [BR:
amax00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amax03032
]
ABWH92_13855 (topA)
03400 DNA repair and recombination proteins [BR:
amax03400
]
ABWH92_13855 (topA)
Enzymes [BR:
amax01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
ABWH92_13855 (topA)
DNA replication proteins [BR:
amax03032
]
Prokaryotic type
DNA Topoisomerases
ABWH92_13855 (topA)
DNA repair and recombination proteins [BR:
amax03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
ABWH92_13855 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Toprim_4
Peptidase_M35
Motif
Other DBs
NCBI-ProteinID:
XHC40880
LinkDB
All DBs
Position
2832920..2835511
Genome browser
AA seq
863 aa
AA seq
DB search
MDLVIVESPAKAKTINKYLGPNYKVLASMGHVRDLPSKDGSVDPEDDFAMRWQNDAGKSK
TITEIARSVKEAERVILATDPDREGEAISWHVLEILKAKKVLKDKPVERVVFNAITKNAV
LEAMDNPRAIDGPLVDAYLARRALDYLVGFTLSPVLWRKLPGSRSAGRVQSVALRLVTER
ETEIEAFVPQAYWTINAHLKNGSNAPFEARLAAYDGTKYGRHDLTDADLAGSIKSMLEQA
DISVAKVEAKPVRRNPYAPFTTSTLQQDASSRLGMSPSTTMRVAQRLYEGTEIDGETVGL
ITYMRTDGVQMAPEAIRSTRKLIGEKYGEQYLPKDARLYSSKAKNAQEAHEAIRPTDLFR
TPDQVKRYLDADQAKLYQLIWSRTMASQMAASVSERTSVDLTATHGGHSADLRASGSVIT
FDGFLAAYDTGASSKDDDDKRLPPITERDRITQEKIEATEKFTEPPARFSEASLVKRMEE
LGIGRPSTYAATLAVLQDRDYIEVEKRRIFAKDKGRLVTAFLEAFFKRYVEYDFTASLEE
ELDQISAGERDWRDVLRAFWTAFSASVDEISELRITQVIDALNDLLGPHIFPDKGDGSDP
RKCPACDDGQLSLKISRYGAFIGCSNYPECNYTRQLAANDNDGEAQAGPVVLGEDTETGE
QITLRDGRFGPYVQLGEEAKPKRASLPKGWDRAAMDLEKALRLLSLPRLVGAHPETGKDI
MAGIGRYGPFVLHDGKYANLESVDEVFEVGINRAVTVIAEKAASGGRGRGAPAALKTLGD
HPDGGAVTVHSGRYGPYVKHGKINATIPKDTKPEDVTMDQAIELIAARAAKAGKKPAAKK
KAPAKKKAAAKKTAAKKKAASGE
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atggatctcgtcatcgtggaatcgccagctaaggcgaagaccatcaacaaatatctcgga
ccaaactataaagttttggcgtcgatgggccatgtgcgcgatttgccgtcgaaagatggt
tcggtggaccctgaagatgattttgcgatgcgttggcagaacgatgctggcaaatccaaa
accattacggaaatcgcgcgaagcgtaaaggaagctgagcgtgttattctcgcgactgac
cctgatagagaaggtgaagcgatctcttggcacgtcttagagatcctgaaggccaagaaa
gttttgaaggacaagccggtggaacgcgtggtgttcaacgcgatcaccaaaaatgctgtt
cttgaagcgatggacaatccacgtgcgattgatggccccctcgtggatgcctatcttgca
cgccgcgcgcttgactatctggttggttttaccttgtcgcccgtgctttggcgcaaactg
ccagggtctcgctctgctggtcgtgtgcagtccgtggcgctccgtcttgttaccgaacga
gaaacagaaatcgaagctttcgttccgcaggcttattggacgatcaacgcgcatttgaag
aacggcagcaacgcgcccttcgaagctcgcctagcggcctatgatggtaccaagtatggc
cgtcatgatctgactgatgctgatttggccggttcgatcaaaagtatgttggagcaggct
gatatttcggttgctaaggttgaagccaaaccggtgcgccgtaacccttacgcaccgttt
acaacctcaacgcttcagcaagacgcctcgtcacgccttggtatgtcacctagcacaaca
atgcgggttgctcagcgcctttacgaaggcacagaaatagatggcgaaacggtcggtctc
attacatatatgcggactgacggcgtccaaatggcgcctgaagctatccggtccacacgt
aagctgatcggcgagaagtatggcgagcagtatttgccgaaggacgcacggctctactct
tccaaggccaaaaatgcgcaagaggcgcacgaagcgatccgaccgacggatctgttccgc
acaccggaccaggtgaagcggtatctggatgcggatcaggcgaagctctaccagcttatt
tggtcacgcacgatggcgagccaaatggcggcttcggtttcagagcgtacaagcgtcgac
ctgactgccacccatggcgggcattcagctgaccttcgtgccagcggctcagttatcact
ttcgatggcttcttggctgcttatgacactggtgcatcatcaaaagatgatgacgacaag
cgtttgccacccatcaccgagcgtgatcgcattacacaagaaaaaattgaagcgacagag
aagttcaccgagccccctgcccgtttttctgaggccagccttgtcaaacggatggaagag
cttgggataggtcgcccgtcaacctacgcggcgactctggccgttcttcaagaccgcgat
tatatcgaagttgagaaacgtcgtatctttgccaaagacaaagggcgtttggtgaccgcg
ttcttggaggcattcttcaaacgctatgttgagtacgatttcactgcctcgctagaagaa
gagcttgaccaaatttccgccggtgagcgtgactggcgcgacgtgcttcgggcgttctgg
acggccttttcagcatcagtcgatgagatatccgagcttcgcatcacacaagtcatcgat
gccctgaacgatttgcttgggccacacatcttccccgataagggcgatggctcagacccc
cgcaagtgcccagcctgtgatgatgggcagctctctttgaagatctcgcgctacggcgct
ttcataggctgctcgaactatcctgagtgcaactacacacgtcagcttgcggccaatgac
aatgatggtgaggcgcaagctggaccggtcgtgcttggcgaggatactgaaacaggcgag
cagataacgcttcgcgatggccgttttgggccctacgtccaattgggcgaagaggccaag
cccaagcgcgcaagtctgccaaagggctgggatcgtgctgcgatggacttggagaaggct
ttgcgacttctttctcttcctcgtcttgtcggagcccatccggaaacgggcaaagatatt
atggcaggcattggccgttacgggccattcgttctgcatgatggcaagtacgccaacttg
gaatccgtcgatgaggtgtttgaggttggtatcaatcgggcggtgaccgtgattgctgaa
aaagcagccagcggtggtcgtggacgcggcgccccggcggctttaaaaacgctgggcgat
catcctgacggtggcgcggtcacagtgcattcggggcgttacggcccttatgtgaaacac
ggcaagatcaatgcaacgatccctaaggatacgaagcctgaagatgtgacgatggatcaa
gccatcgaactgatcgcggcgcgggccgccaaggcaggcaagaagccagctgcaaaaaag
aaagcccccgccaagaaaaaggcagccgccaaaaagacagcagctaagaagaaagcagcc
agcggcgaatga
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