Actinomadura madurae: LUW76_03955
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Entry
LUW76_03955 CDS
T08933
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
amaz
Actinomadura madurae
Brite
KEGG Orthology (KO) [BR:
amaz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
amaz03016
]
LUW76_03955
Enzymes [BR:
amaz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
LUW76_03955
Transfer RNA biogenesis [BR:
amaz03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
LUW76_03955
Prokaryotic type
tRNA splicing ligases
LUW76_03955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
URM93548
LinkDB
All DBs
Position
complement(815732..816925)
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AA seq
397 aa
AA seq
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MPYQTLKGGRVPIRMWTDPGTVEDLALDQLRNVSALPWVEGLAVMPDVHYGKGATVGSVI
AMKDAVSPAAVGVDIGCGMTAAKSSLTVEDMPDDLAGLRSRLEKAIPVGRGSHKQAVDPS
GLPNLKERGWYDFWKAFDELHPAVRSRLGRARSQMGTLGGGNHFLELCADDKGAIWLVLH
SGSRNIGNELAEQHIEAARRLPHNQDLPDNDLAVFLTGTAKMDAYRHDLFWAQEYARRNR
AVMMALAQNVVTRRFGEKRCKWNQVISCHHNYVAEEEYGGVELLVTRKGAIRAGRGDLGI
IPGSMATGTYIVRGLGNDSAYNSASHGAGRRMSRNKARKSFTVEDLVEQTRGVECRKDSG
VIDEIPGAYKDLETVIEAQSDLVEVVAHLRQLICVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgccgtaccagacgctgaagggcggccgtgtccccatccggatgtggaccgaccccggc
accgtcgaggacctcgccctcgaccagctccgcaacgtctccgccctcccgtgggtcgag
ggcctcgcggtgatgcccgacgtccactacggcaagggcgccaccgtcggctcggtgatc
gcgatgaaggacgcggtgtcgccggccgccgtcggcgtcgacatcggctgcgggatgacc
gccgccaagtcgtcgctcaccgtcgaggacatgccggacgacctggcggggctgcgcagc
cgcctggagaaggcgatcccggtcgggcgcggctcccacaagcaggccgtggacccgtcc
gggctcccgaacctgaaggagcgcggctggtacgacttctggaaggccttcgacgagctg
cacccggcggtgcggtcccggctcggccgcgcgcggtcccagatgggcaccctcggcggc
gggaaccacttcctggagctgtgcgcggacgacaagggcgcgatctggctggtcctgcac
tccggctcgcgcaacatcggcaacgagctggccgagcagcacatcgaggccgcccggagg
ctcccgcacaaccaggacctcccggacaacgacctggcggtgttcctgaccgggacggcc
aagatggacgcctaccggcacgacctgttctgggcgcaggagtacgcgcgccgcaaccgc
gccgtcatgatggcgctggcgcagaacgtcgtgacgcggcggttcggcgagaagcgctgc
aagtggaaccaggtcatctcctgccaccacaactacgtggccgaggaggagtacggcggc
gtcgagctcctggtcacccgcaagggcgcgatccgcgccggccgcggcgacctcgggatc
atcccggggtccatggcgaccggcacctacatcgtgcgcgggctcggcaacgacagcgcg
tacaactccgcctcgcacggcgcgggccgccggatgagccgcaacaaggcccgcaagagc
ttcaccgtcgaggacctcgtggagcagacccggggcgtcgagtgccgcaaggacagcggc
gtcatcgacgagatcccgggcgcctacaaggacctggagacggtgatcgaggcgcagtcc
gacctcgtggaggtcgtcgcgcacctgcgccagctcatctgcgtcaagggctag
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