Actinomadura madurae: LUW76_19940
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Entry
LUW76_19940 CDS
T08933
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
amaz
Actinomadura madurae
Pathway
amaz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
amaz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LUW76_19940 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amaz03400
]
LUW76_19940 (ligD)
Enzymes [BR:
amaz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LUW76_19940 (ligD)
DNA repair and recombination proteins [BR:
amaz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LUW76_19940 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_ligase_OB_2
GAAD
Motif
Other DBs
NCBI-ProteinID:
URM96417
LinkDB
All DBs
Position
complement(4343174..4344112)
Genome browser
AA seq
312 aa
AA seq
DB search
MYPPMLALLGELPTTEGWAAELKWDGVRAVAYVRDERLQLMSRNDKDITVAWPELAPLAA
AVDVPVVLDGEIVAFEPDGRPSFTALAPRTHLRQPHRIQALAESNPVSYMIFDVLHRDDD
PQIALPYAERRRVLQGLGLDGPRWKTTNSHDDVATAFAESSRLGMEGVVSKRVDSPYRPG
KRHRDWTKTKNFRTQEVVVVGWKPGEGRRADRIGALLLAVNDERGRLRYAGHVGTGFTDA
ILDDLAERLTPLRQDDPPVPDAPPQHVRDARWVRPELVGEIVFAEWTGDGRLRHPSWRGV
RTDKAPGQVRRE
NT seq
939 nt
NT seq
+upstream
nt +downstream
nt
atgtatccgccgatgttggccctgctgggggaactgccgaccacggaaggctgggcggcc
gagttgaagtgggacggagtccgcgcagtcgcctacgttcgcgacgaacggctacagctg
atgtcgcgcaacgacaaggacatcaccgtggcctggcccgaactcgccccgctcgccgcg
gcggtcgacgtgccggtggtgctggacggggagatcgtggcgttcgaaccggacggcagg
ccgtcgttcacggcgctcgccccgcggacgcacctgcgtcagccacaccgcatccaggct
ctggcggagtccaaccccgtctcttacatgatttttgatgtgctgcaccgcgacgatgat
ccgcagatcgccctgccctacgccgagaggcgcagggttctccaggggctcgggctggac
gggccgcgctggaagacgaccaattcccacgacgacgtcgcgacggccttcgccgagtcg
tcccgtctcggcatggagggcgtggtgtccaagcgcgtcgactctccgtaccggccgggg
aaacggcatcgggactggaccaagaccaagaacttccggacgcaggaagtggtcgtcgtc
gggtggaagccgggggagggccgccgcgccgaccggatcggcgcgctcctgctggccgtc
aacgacgagcgtggacggctgagatacgccggccatgtcggtaccggcttcaccgatgcg
atcctggacgacctcgccgagcgtctgacgccgctgcggcaggacgacccgccggttccc
gacgctccccctcagcacgtgcgggacgcccgctgggtgcggccggagctggtcggtgag
atcgtcttcgccgagtggaccggcgatggtcggctgcggcacccgagctggcgtggggtc
cgtacggacaaggcacccggccaagtccgccgcgaatag
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