Actinomadura madurae: LUW76_31265
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Entry
LUW76_31265 CDS
T08933
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
amaz
Actinomadura madurae
Pathway
amaz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
amaz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LUW76_31265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amaz03021
]
LUW76_31265
03400 DNA repair and recombination proteins [BR:
amaz03400
]
LUW76_31265
Enzymes [BR:
amaz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LUW76_31265
Transcription machinery [BR:
amaz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LUW76_31265
DNA repair and recombination proteins [BR:
amaz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LUW76_31265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
TarH
Laminin_II
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
URM98466
LinkDB
All DBs
Position
6645524..6649396
Genome browser
AA seq
1290 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYMITSVDAERRDRDLPTLEAHISVERQQIEQARDAQVEARQQKLEGD
LAELEEAGAKADQKRKVRDGAEREMKQLRDRAQRELDRLDEVWSRFKNLKVQDLEGDELL
YREMRDRFGKYFEGGMGAAAIQARLQNFDLDAEAEKLRDIIRTGKGQKKARALKRLKVVS
AFLNTRNSPLGMVLDCIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERAR
PVVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSTNNILKPSDGKPVTMPTQDMVIGLYWLTTQKDGANGEGR
SFGSVAEAIMAYDRHELDLQAKIQIRLKDIPPPRGWKAPEGYEPGRPYRLETTLGRAMFN
ETLPDDYPFVDDEIGKKQLSAIVNELAETYPKVAVANALDALKSTGFHWATRSGVTIAID
DVITPPNKQEILGGYEQRAEKVQREFNRGLITDDERKQELIEIWNKATADVAVDMEKAFP
KANPIWMMIQSGARGNPLQLRQIAGMRGLVSNPKGETIPRPIKSSFREGLSVVEYFISTH
GARKGLADTALRTADSGYLTRRLVDVAQDVIVREEDCGTDRTIPFEVADRLADGTLVKLA
TTETSLVGRTIAEDVVVDGTVIFPADTDLSDSVVSRLVEAGVEKVRTRSALVCEAKIGVC
AACYGRSLATGKRVDVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGGDITHGLPRVQEL
FEARIPKGVAPISEVAGRVKIDETEKARKVVIVPDDGSDEIAYPVPMRSRLLVKEGESVG
VGQQLIAGAINPHEVLRILGPRAVQLHLVQEVQEVYRSQGVSIHDKHIEIIVRQMLKRVN
ILESGDTDLLPGDLVERPIFEETNRNVVAEGGVPAAGRPVLMGITKASLATESWLSAASF
QETTRVLTEAAMHAKSDPLLGLKENVIIGKLIPAGTGMPQYRNVRVEPTEEAKAAVYSVG
SYDDGAEYAFGQGSGEAVPLEEYDFGQYNR
NT seq
3873 nt
NT seq
+upstream
nt +downstream
nt
ttgcttgacgtcaacttcttcgacgagcttcgcatcggtctggcgaccgccgacgacatc
cgccagtggtcgcacggcgaggtgaagaagccggagacgatcaactaccggaccctcaag
ccggagaaggacgggctcttctgcgagaagatcttcggtccgacccgggactgggagtgc
tactgcggcaagtacaagcgcgtccgcttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgacccgcgccaaggtgcgccgcgagcggatgggccacatcgagctggccgcgccg
gtcacgcacatctggtacttcaagggcgtgccgtcgcgcctcggctacctgctggacctg
gccccgaaggatctggaaaagatcatctacttcgcggcctacatgatcaccagcgtggac
gcggagcggcgcgaccgcgacctgcccacgctggaggcgcacatctcggtggagcgccag
cagatcgagcaggcccgcgacgcgcaggtcgaggcccgccagcagaagctggagggcgac
ctcgcggagctggaggaggccggcgcgaaggccgaccagaagcgcaaggtgcgcgacggc
gccgagcgggagatgaagcagctgcgcgaccgcgcgcagcgcgagctcgaccgcctcgac
gaggtgtggagccggttcaagaacctcaaggtccaggacctggagggcgacgagctgctc
taccgcgagatgcgcgaccggttcggcaagtacttcgagggcggcatgggcgccgcggcc
atccaggcgcggctgcagaacttcgacctcgacgccgaggccgagaagctgcgcgacatc
atccgcaccggcaagggccagaagaaggcccgcgccctgaagcggctgaaggtcgtctcg
gcgttcctcaacacccgcaacagcccgctcggcatggtgctggactgcatcccggtcatc
ccgccggacctgcgtcccatggtccagctggacggcggccggttcgccacgtccgacctg
aacgacctgtaccgccgggtcatcaaccgcaacaaccggctcaagcgcctgctcgacctg
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggaggccgtcgacgcg
ctgttcgacaacggccgccgcggccgcccggtcaccgggcccggcaaccgtccgctgaag
tcgctgtccgacatgctcaagggcaagcagggccggttccggcagaacctgctgggcaag
cgcgtcgactactccggccgttcggtcatcgtcgtcggcccgcagctcaagctgcaccag
tgcggcctgcccaagcagatggcgctggagctgttcaagccgttcgtcatgaagcggctg
gtcgacctcaaccacgcgcagaacatcaagtccgccaagcggatggtcgagcgggcccgc
ccggtcgtctgggacgtgctggaagaggtcatcaccgagcacccggtgctgctgaaccgg
gcgccgaccctgcaccgcctcggcatccaggcgttcgagccgcagctggtcgagggcaag
gccatccagatccacccgctcgtctgcaccgcgttcaacgcggacttcgacggcgaccag
atggcggtgcacctgccgctgtccgccgaggcgcaggccgaggcgcggatcctgatgctg
tcgaccaacaacatcctgaagccgtcggacggcaagcccgtcaccatgcccacccaggac
atggtcatcggcctgtactggctgacgacgcagaaggacggcgccaacggcgagggccgc
tcgttcgggtcggtcgccgaggcgatcatggcctacgaccggcacgagctggacctgcag
gccaagatccagatccggctcaaggacatcccgccgccccgcggctggaaggcgcccgag
ggctacgagcccggccggccgtaccggctggagaccacgctcggccgcgcgatgttcaac
gagacgctgccggacgactacccgttcgtcgacgacgagatcggcaagaagcagctctcg
gcgatcgtgaacgagctggcggagacctacccgaaggtcgccgtcgccaacgccctggac
gcgctcaagagcaccgggttccactgggcgaccaggtccggtgtcacgatcgcgatcgac
gacgtcatcacgccgccgaacaagcaggagatcctgggcggctacgagcagcgcgcggag
aaggtgcagcgggagttcaaccgcggcctgatcaccgacgacgagcgcaagcaggagctc
atcgagatctggaacaaggccaccgcggacgtcgcggtggacatggagaaggcgttcccg
aaggccaacccgatctggatgatgatccagtcgggcgcccgcggcaacccgctgcagctc
cgccagatcgccggcatgcgcggcctggtctccaacccgaagggcgagaccatcccgcgt
ccgatcaagtcgtcgttccgcgagggcctgtcggtcgtcgagtacttcatctcgacgcac
ggcgcccgcaagggcctggccgacaccgcgctgcgcaccgccgactcggggtacctgacc
cggcgcctggtggacgtcgcgcaggacgtcatcgtccgcgaggaggactgcggcaccgac
cgcacgatcccgttcgaggtcgccgaccggctggccgacggcacgctggtcaagctggcc
accaccgagaccagcctggtcggccgcacgatcgccgaggacgtcgtcgtcgacgggacg
gtcatcttcccggccgacaccgacctgtccgactcggtcgtgtcccgcctggtcgaggcg
ggcgtggagaaggtccgcacccgcagcgccctggtctgcgaggccaagatcggtgtctgc
gccgcctgctacggccgctcgctggccaccggcaagcgggtggacgtcggcgaggccgtc
ggcatcatcgccgcgcagtccatcggcgagcccggcacgcagctgacgatgcgcaccttc
cacaccggcggtgtggccggcggcgacatcacgcacggtctgccgcgtgtccaggagctg
ttcgaggcccgcatcccgaagggtgtggccccgatcagcgaggtcgccggccgcgtcaag
atcgacgagacggagaaggcccgcaaggtcgtcatcgtcccggacgacggctccgacgag
atcgcctacccggtgccgatgcggtcccgcctcctggtcaaggagggcgagtccgtgggc
gtcggccagcagctcatcgcgggcgcgatcaacccgcacgaggtgctgcgcatcctcggg
ccccgcgccgtgcagctccacctggtccaggaggtccaggaggtctaccggtcgcagggc
gtgtcgatccacgacaagcacatcgagatcatcgtccgccagatgctgaagcgggtgaac
atcctcgagtcgggcgacaccgacctgctgccgggcgacctggtcgagcgtccgatcttc
gaggagacgaaccggaacgtcgtggccgagggcggggtccccgccgccggccgccccgtc
ctgatgggcatcaccaaggcctcgctcgcgaccgagtcgtggctgtcggcggcgtccttc
caggagacgacccgggtgctcaccgaggccgcgatgcacgccaagagcgacccgctgctc
ggcctcaaggagaacgtcatcatcggtaagctcatcccggccggtaccggcatgccgcag
taccgcaacgtccgggtcgagccgaccgaggaggcgaaggcggcggtctactccgtcggc
tcctacgacgacggcgccgagtacgccttcgggcagggctccggcgaggccgtcccgctg
gaggagtacgacttcggccagtacaaccgctga
DBGET
integrated database retrieval system
