Actinomadura madurae: LUW76_40165
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Entry
LUW76_40165 CDS
T08933
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
amaz
Actinomadura madurae
Pathway
amaz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amaz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LUW76_40165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amaz03019
]
LUW76_40165
Messenger RNA biogenesis [BR:
amaz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LUW76_40165
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
URN00034
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Position
8434086..8435771
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AA seq
561 aa
AA seq
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MSHPHPELSDPPAPPEGGLRIVPLGGLGEIGRNMTVFEYGGRLLVVDCGVLFPETEQPGI
DLILPDFEYIRDRLDDIEAVILTHGHEDHIGAVPYLLRERRDIPLVGSRLTLALLEAKLT
EHRIKPVTDVVVEGERRTFGPFGCEFLAVNHSIPDALAVAIRTSAGLVLHTGDFKMDQLP
LDGRLTDLPGFARLGADGIDLLMADSTNAEVPGFVTSERNIGPVVDEVFRTAQERLIVAC
FASHIHRVQQVLDAAVANGRKVCFVGRSMVRNMGVARELGYLSVPEGVMVDQKEIDDIPG
DRLVLVCTGSQGEPMSALSRMANRDHSIRITERDTVMLASSLIPGNENAVNRVINGLTRW
GARVVHKGNALVHVSGHASAGELLYVLNVTKPANFMPIHGEWRHLRAHAKLAALTGVPEE
GVVIAEDGVVVDLVDGRASIVGAVPAGYVYVDGLSVGEVTETSLKDRRILGEEGFVSIVV
GIDSTSGKLVAGPEVHARGAGIVNEDFDEVIARIEEVLRDAAGDGVNDLHQIGQLIRRTV
GKWVSDNYRRRPMIVPVVVEV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
gtgagtcatcctcacccggagctctcggacccgcccgcaccgcccgagggcggcctgcgc
atcgtccccctgggcgggctcggggagatcggccgcaacatgacggtgttcgagtacggc
ggtcgcctgctcgtcgtcgactgcggcgtgctgttccccgagaccgagcagcccggaatc
gacctgatcctgcccgacttcgagtacatcagggaccgcctggacgacatcgaggccgtc
atcctcacgcacggccacgaggaccacatcggcgccgtcccgtacctgctgcgcgagcgc
cgcgacatccccctcgtcggctcccggctcacgctggcgctgctggaggccaagctcacc
gagcaccggatcaaacccgtcaccgacgtggtcgtggagggcgagcgccgcaccttcggg
ccgttcggctgcgagttcctcgccgtcaaccactcgatcccggacgcgctcgccgtcgcc
atccgcacgtccgccggcctcgtcctgcacaccggcgacttcaagatggaccagctcccg
ctggacggccggctcaccgacctgcccgggttcgcccggctcggcgccgacggcatcgac
ctgctgatggccgactccaccaacgccgaggtgcccggcttcgtcaccagcgagcgcaac
atcgggccggtcgtggacgaggtcttccgcaccgcgcaggagcggctcatcgtcgcctgc
ttcgcctcgcacatccaccgcgtccagcaggtcctggacgccgccgtcgccaacggccgc
aaggtctgcttcgtcggccggtcgatggtccgcaacatgggcgtcgcgcgcgagctcggg
tacctgagcgtccccgagggcgtcatggtcgaccagaaggagatcgacgacatccccggc
gaccggctggtgctggtgtgcaccggctcgcagggcgagccgatgtccgcgctgtcgcgg
atggcgaaccgcgaccactcgatccgcatcaccgagcgcgacaccgtgatgctggcgtcg
tcgctgatccccggcaacgagaacgcggtcaaccgcgtcatcaacgggctcacccggtgg
ggcgcccgcgtcgtccacaagggcaacgcgctggtgcacgtgtccgggcacgcgtccgcg
ggcgagctgctgtacgtgctcaacgtgaccaaaccggcgaacttcatgcccatccacggc
gagtggcggcacctgcgcgcgcacgccaagctcgcggcgctcaccggcgtgccggaggag
ggcgtcgtcatcgccgaggacggcgtcgtcgtcgacctcgtggacggccgcgcgagcatc
gtcggcgccgtcccggccgggtacgtgtacgtcgacggcctctcggtcggcgaggtcacc
gagacctcgctgaaggaccggcgcatcctcggcgaggaggggttcgtctccatcgtcgtc
gggatcgactccacgtccggcaagctcgtcgccgggcccgaggtgcacgcccgcggcgcc
ggcatcgtgaacgaggacttcgacgaggtcatcgcgcggatcgaggaggtgctgcgggac
gccgccggcgacggcgtgaacgacctgcaccagatcggccagctgatccggcgcacggtc
ggcaagtgggtgagcgacaactaccgccgccgcccgatgatcgtcccggtcgtcgtggag
gtctga
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