Actinomadura madurae: LUW76_47130
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Entry
LUW76_47130 CDS
T08933
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
amaz
Actinomadura madurae
Brite
KEGG Orthology (KO) [BR:
amaz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amaz03019
]
LUW76_47130 (hrpA)
Enzymes [BR:
amaz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LUW76_47130 (hrpA)
Messenger RNA biogenesis [BR:
amaz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LUW76_47130 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
T2SSE
NACHT
AAA_16
ResIII
PhoH
SLFN-g3_helicase
AAA_23
Motif
Other DBs
NCBI-ProteinID:
URN01273
LinkDB
All DBs
Position
9977637..9981557
Genome browser
AA seq
1306 aa
AA seq
DB search
MKPPLADLRARLPRLMLRDEHRLRRRIDGVQKMRDARRQARVAEEITADIEAAERRVERR
RGAVPAITYPAQLPVAQKKDDLLSAIRDHQVVIVAGETGSGKTTQIPKICLELGRGVRGS
IGHTQPRRLAARTVADRIAEELGTELGDAVGYKVRFTDRSSDGTLVKLMTDGILLAEIQT
DRLLRQYDTLIIDEAHERSLNIDFLLGYVREILPRRPDLKVVITSATIDPERFSAHFGDA
PIVEVSGRTYPVEVRYRPITDPDDPSADPDRDQIQAVVDAVDELGREAPGDVLVFLSGER
EIRDTADALTKHFTRRKSATEVLPLYARLSSAEQHRVFRPHRGRRVVLATNVAETSLTVP
GIKYVVDPGTARISRYSHRLKVQRLPIEPVSQASANQRKGRCGRVSEGVCIRLYSEEDFE
SRPEFTDPEILRTNLASVILQMTSLGLGDIAAFPFVEPPDRRNVKAGVDLLHELGAIDPA
EKDPRKRLTPLGRRLAQLPVDPRLGRMILEADRNGCVREVLIIASALSIQDPRERPADHQ
QAADDKHRRFADPTSDFLAYLNLWNYLREQQKELSGSAFRRMCKNEFLHFLRVREWQDLH
GQLKQVAKSLGVTINTADAPPDRIHTALLAGLLSHIGLMDTEKKDKQRRGHEYLGARGAK
FAVFPGSSLFKKPPRWVMSAELVETSRLWGRINAKIEPEWVEPLAGHLVKRNYSEPHWSK
KQAAVMAREKVTLYGVPIVADRRVNYGRIDPVLSRELFIRHALVEGDWETGHRFFHDNRA
LLDEVEELEHRARRRDILVDDETLFDFYDARIPEDVVSGRHFDAWWKKARRDDPDLLGFE
KSMLINETAGGVSESDYPDVWKQGPLRLRLTYQFEPGADADGVTVHVPVQVLNQVRPDGF
EWQVPGLRAELVTELIRSLPKQLRVNFVPAPDYARKVLDRVAPRSEPLLDALERELTAMT
SVPVAREAWDPSRLPAHLRITFRVVDDRGRGLGEGTDLDELKRRLAGQVRGTLSKAASTI
ERSGLTEWTIGELPRTYERNQAGYDVKAYPALTDEGAAVAVRMYETEAEQRRAMWLGTRR
LILLNAPSPVKLIQGRLTNKGKLALSHNPHGSVTALFDDCVTAAADRLVAEAGGPAWDEA
GFRALYDRVRADLHDATAEIVALVERILAEAHEADRRLRGTTSLTLVPALTGIRGHLESL
IRPGFVTATGWARLHDLPRYLRALQIRLDKLPENPGRDRMLAHQVDVLKEEYEQTLRRLH
PSRREDEPARQIRWMLEEFRVSLFAQQLGTRYPVSDKRIRKAMAQL
NT seq
3921 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaccgccgctcgccgacctgcgcgcgcgcctgccgcggctgatgctgcgtgacgag
caccggctgcgccgccggatcgacggcgtccagaagatgcgggacgcccggcgccaggcc
agggtcgccgaggagatcaccgccgacatcgaggccgccgagcggcgcgtcgagcggcgg
cgcggcgccgtgcccgcgatcacctaccccgcgcagctgccggtcgcgcagaagaaggac
gacctgctctccgccatccgcgaccaccaggtcgtgatcgtcgcgggtgagacgggctcc
ggcaagaccacccagatccccaagatctgcctggagctcggccggggcgtgcgcggctcg
atcgggcacacccagccgcgccggctcgccgcccggacggtcgccgaccgcatcgccgag
gagctcggcaccgagctcggcgacgccgtcggctacaaggtgcgcttcaccgaccggtcc
agcgacggcacgctcgtcaagctgatgacggacggcatcctgctcgccgagatccagacc
gaccggctgctccgccagtacgacaccctgatcatcgacgaggcgcacgagcgcagcctg
aacatcgacttcctgctcggctacgtcagggagatcctgccccgccgccccgacctcaag
gtcgtcatcacctcggcgaccatcgacccggagcgcttctccgcgcacttcggcgacgcc
ccgatcgtggaggtgtccggccggacgtacccggtggaggtccggtaccggccgatcacc
gacccggacgacccgtccgccgatcccgaccgcgaccagatccaggcggtcgtcgacgcg
gtggacgagctgggccgcgaggcgcccggcgacgtcctggtgttcctcagcggcgagcgg
gagatccgcgacaccgccgacgcgctcaccaagcacttcacccggcgaaagtcggcgacc
gaggtcctgccgctgtacgcgcgcctgtcgtcggccgagcagcaccgggtgttccggccg
caccgcggccgccgggtcgtcctcgcgaccaacgtcgcggagacgtcgctgaccgtgccg
ggcatcaagtacgtcgtcgatcccggcaccgcgcgcatctcccgctacagccaccggctg
aaggtgcagcggctcccgatcgagccggtctcgcaggcgtcggcgaaccagcgcaaggga
cgctgcgggcgcgtgtccgagggcgtgtgcatccggctgtactccgaggaggacttcgag
tcccgccccgagttcaccgatccagagatactgcggacaaacctcgcctccgtcatcctc
cagatgacctccctcgggctcggcgacatcgccgcgttcccgttcgtcgagccgccggac
cgccgcaacgtcaaggccggcgtcgacctcctgcacgagctgggcgcgatcgacccggcc
gagaaggacccgcgcaagcgcctcaccccgctcggccgccgcctcgcccagcttcccgtc
gacccgcggctcggccgcatgatcctggaggcggaccgcaacggctgcgtccgcgaggtg
ctgatcatcgcgtcggcgctgtcgatccaggacccgcgcgagcgtccggccgaccaccag
caggccgccgacgacaagcaccgccggttcgccgaccccacgtccgacttcctggcctac
ctgaacctgtggaactacctgcgcgagcagcagaaggagctgtcgggcagcgccttccgc
cggatgtgcaagaacgagttcctgcacttcctgcgcgtccgcgaatggcaggacctgcac
ggccagctcaaacaggtcgccaagtcgctcggcgtcacgatcaacaccgccgacgcgccg
cccgaccgcatccacaccgcgctgctcgccggactgctgtcgcacatcgggctcatggac
accgagaagaaggacaagcagcggcggggccacgagtacctcggcgcccgcggcgcgaag
ttcgccgtgttccccggatcgtcgctgttcaagaagccgccgcgctgggtgatgtcggcc
gagctggtcgagacgtcccggctgtggggacggatcaacgccaagatcgagccggagtgg
gtcgagccgctcgcgggccatctggtgaagcgcaactacagcgagccgcactggtccaag
aagcaggcggccgtcatggcgcgcgagaaggtgacgctctacggggtgccgatcgtcgcc
gaccgccgcgtcaactacgggcgcatcgaccccgtgctctcccgcgagctgttcatccgg
cacgccctcgtcgagggcgactgggagaccggtcaccggttcttccacgacaaccgcgcg
ctgctggacgaggtggaggagctggagcaccgcgcccggcgccgcgacatcctcgtcgac
gacgagaccctcttcgacttctacgacgcgcgcatccccgaggacgtcgtctccggccgg
cacttcgacgcctggtggaagaaggcccggcgcgacgaccccgacctgctcggcttcgag
aagtcgatgctcatcaacgagaccgcgggcggggtcagcgagtccgactatcccgacgtg
tggaagcagggcccgctccgcctgcgcctcacctaccagttcgagccgggcgccgacgcc
gacggcgtcaccgtgcacgtccccgtccaggtcctcaaccaggtgcggcccgacggcttc
gaatggcaggtgccgggcctgcgcgccgagctcgtcaccgagctgatccggtcgctgccc
aagcagctgcgcgtcaacttcgtcccggcccccgactacgcccgcaaggtcctcgaccgc
gtggcgccgcgcagcgagccgctcctggacgcgctggagcgtgagctgaccgcgatgacg
agcgtgcccgtcgcgcgggaggcgtgggacccgtcccgcctgcccgcccatctgcgcatc
acgttccgggtcgtggacgacaggggacgcggcctgggcgagggcaccgacctcgacgag
ctgaagcgccgcctcgccggccaggtgcgcgggaccctgtccaaggcggcgtccaccatc
gagcgctccggcctcaccgagtggacgatcggcgagctgccccgcacctacgagcgcaac
caggccgggtacgacgtcaaggcgtatccggcgctcaccgacgagggcgccgccgtcgcg
gtccgcatgtacgagaccgaggccgagcagcgccgcgccatgtggctcggcacgcggcgg
ctgatcctgctgaacgcgccgtcgccggtgaagctcatccagggccggctgaccaacaag
ggcaagctcgcgctgagccacaacccgcacggctccgtcaccgcgctcttcgacgactgc
gtcaccgccgccgccgaccggctcgtcgccgaggcgggcggacccgcctgggacgaggcc
gggttccgcgccctgtacgaccgggtgcgcgccgacctgcacgacgcgacggccgagatc
gtcgcgctggtggagcggatcctcgcggaggcgcacgaggccgaccggcggctgcgcggc
acgacgagcctcacgctcgtcccggcgctgaccggcatccgcggccatctcgaatcgctg
atccgtcccgggttcgtcaccgcgaccggctgggcccggctgcacgaccttccccgctat
ctgcgcgccctgcagatcaggctcgacaagctccccgagaaccccggccgcgaccggatg
ctcgcccatcaggtcgacgtgctgaaggaggagtacgagcagacgctgcggcgccttcac
ccgtcccgccgcgaggacgagccggcccggcagatccgctggatgctggaggagttccgg
gtcagcctgttcgcccagcagctcggcacgcgctaccccgtctccgacaagcgcatccgg
aaggcgatggcccagctctga
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