Alteromonas macleodii Balearic Sea AD45: AMBAS45_00735
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Entry
AMBAS45_00735 CDS
T02253
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
amb
Alteromonas macleodii Balearic Sea AD45
Pathway
amb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AMBAS45_00735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amb03019
]
AMBAS45_00735
03400 DNA repair and recombination proteins [BR:
amb03400
]
AMBAS45_00735
Enzymes [BR:
amb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AMBAS45_00735
Messenger RNA biogenesis [BR:
amb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AMBAS45_00735
DNA repair and recombination proteins [BR:
amb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AMBAS45_00735
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
CRS1_YhbY
T4SS-DNA_transf
PB4_spike
Motif
Other DBs
NCBI-ProteinID:
AFT93633
LinkDB
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Position
complement(164956..166797)
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AA seq
613 aa
AA seq
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MTTAIAPSELTPETQRVKTPETVLKDVFGYDAFRDGQGEVIHQVCEGKDALVLLPTGGGK
SLCYQIPALVRQGTAIVVSPLISLMQDQVEQLKALGVKAAYLNSTLEADEQARINDALQA
GKLDLLYVSPERLMQYYFQQSLAHADIALFAIDEAHCVSHWGHDFRQDYRALGQIKSRFP
SIPVIGLTATADSATQADILTQLNLNDPLVYKGSFDRPNIRYRVMSKYKAFDQVVAYVKQ
QEGSGIIYCNSRAKVDDLHAKLFRQGFRCAAYHAGMDNDERELVQRQFLNDKIDIVVATV
AFGMGINKSNVRYVVHHDVPRSVESYYQETGRAGRDGLESEALLLFDEKDAARVKQWIEQ
GEIAERNQIELQKFAAMEAFSEAQTCRRQVLLNYFSQFSDSACGNCDICLDPPKMIDGLV
IAQKVLSCVLRLSQQASSQYVIDVLRGKQLRRLQEAGHHQLSTYGIGKDKSDSYWHNIIN
QLVHKGLIRVDITAHAALRLTEAARPVLKGEVAVQLAVPRLEFKPDKKKAKQAPANYDRT
LFTRLKHLRKVLAEENEVPPYVVFSDATLVDMACKLPTTRNTLLDVSGVGQTKLERYGEA
FIQLIDDYINREH
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgacaactgcaatagctccatcagaattaacgccagaaacgcaacgtgtaaaaacacca
gaaaccgtcttaaaagatgtatttggttacgatgctttccgcgacggtcaaggcgaagtc
attcaccaagtatgtgaaggtaaagacgcacttgttttgcttccaacaggtggtggcaag
tcgctatgctatcaaattcctgcgttagtgcgccaaggcaccgctattgttgtgtccccg
cttatatcgcttatgcaggatcaagtagaacagcttaaagcgctgggcgtaaaagctgcc
tatcttaattcaacgctagaagcagacgaacaagcacgcataaatgacgcacttcaagca
ggaaagctcgacttgctctatgtctcgcctgagcgtttaatgcagtactattttcagcag
tcgcttgcgcacgccgacattgccttatttgccattgatgaagcgcactgcgtttcccat
tgggggcacgatttcaggcaggattatcgcgctctggggcaaataaaatctcgcttcccc
tctattcctgttattggactcacagcgactgcagattcggccacccaagcagacatactg
acgcagctaaaccttaacgacccgctggtttataaaggcagcttcgacagacccaatatt
cgctaccgcgtaatgagcaagtacaaagcctttgatcaagttgttgcttacgtaaaacag
caagaaggtagcggcattatttactgtaacagtcgcgcgaaagtcgacgacctgcacgct
aaattattcagacaaggctttcgctgtgcggcctatcacgcgggtatggataacgacgag
cgagagctggtacagcgccagtttcttaacgacaaaattgatattgtggtggccaccgtt
gcctttggcatgggtatcaacaaatcgaacgtgcgttatgtggttcaccacgacgttccg
cgcagtgttgaaagctattatcaagagaccggccgagcggggcgagacggcttggagtca
gaagctttattgttgtttgatgaaaaagatgcagcccgcgtaaaacagtggatagagcaa
ggggaaatagccgagcgcaaccaaatagagttacaaaaatttgcggctatggaagctttt
tcagaagcgcaaacctgtcgtagacaagtactcctgaactacttttcgcagttcagtgac
agcgcctgtggtaactgcgacatttgcttagacccacctaagatgatagatggtttggtg
attgcacagaaagtactgtcgtgtgtacttcggctctcacagcaagcctctagccagtat
gtcattgatgttttgcgaggcaagcagcttaggcgccttcaggaagcaggccaccaccag
ctctccacatacggcataggtaaagataagtcggatagctactggcacaacattatcaac
cagcttgttcataaaggccttatacgcgttgatattaccgctcatgccgcattgcgctta
accgaggccgctcggcctgtgctaaaaggtgaagtagcggttcagcttgccgttccgcga
cttgaatttaagcccgacaagaaaaaagcaaaacaagcgccggccaattacgatagaacg
ttgttcacccgtcttaagcacttacgcaaagtgttggccgaagaaaatgaagtgccgccg
tatgtggtatttagtgacgccactttggtggatatggcgtgtaagctccctactacgcgc
aacaccttgcttgatgtaagcggcgtaggccaaaccaaactcgagcgctatggtgaggct
tttatccagcttattgatgattacataaatcgagagcactga
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