Alteromonas macleodii Balearic Sea AD45: AMBAS45_02885
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Entry
AMBAS45_02885 CDS
T02253
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
amb
Alteromonas macleodii Balearic Sea AD45
Pathway
amb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AMBAS45_02885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amb03019
]
AMBAS45_02885
03009 Ribosome biogenesis [BR:
amb03009
]
AMBAS45_02885
Enzymes [BR:
amb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AMBAS45_02885
Messenger RNA biogenesis [BR:
amb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AMBAS45_02885
Ribosome biogenesis [BR:
amb03009
]
Prokaryotic type
rRNA helicases
AMBAS45_02885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
HEM4
AAA_30
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AFT94057
LinkDB
All DBs
Position
complement(654899..656689)
Genome browser
AA seq
596 aa
AA seq
DB search
MTTTVDMTFKDLNLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAA
FALPMLANIDPEQRKPQLLVLAPTRELAIQVAEAFQVYASFSQKIKVLPVYGGQSYDNQI
RQLKRGVQVVVGTPGRIIDHIKRKTLDLSELKFLVLDEADEMLRMGFIDDVELILSHAPE
ERQTALFSATMPGPIKKITQRYLKDPKHVKIASKVSTASTIRQRYCQIAPHHKLEALTRI
MEVEVFDGMIIFVRTKTATVELADKLSARGYDVEPLNGDIPQAARERTVEKLKQGKIDIL
VATDVVARGLDVERVSHVINYDIPYDSESYVHRIGRTGRAGRQGDAILFISHREKRLLFS
IEKTTKQPIEAMPIPSISEINETRLSRFKQSVAEATQDDSIESLMPIVEMIKEENEASPE
VLMAALLKIAQGDEPLILKESDRPDINSKPQRDNRERNSRDRDGRERKPRVPRGNRKPEE
GMQRFRIEVGHVHGAKPGNIVGAIANEANINSKHIGAIEIYDNFSTVDLPDGMPKETRDT
LQGTRVAGQRLNIREWSDTPPAKGRGERGNRGDRAPRGNREDRPNRGDRENRKRKN
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atgaccacaactgtcgacatgacatttaaagacctcaatttaccagaacctatcttacaa
gcccttgaaaaagttggctacgagaaaccgtctcctattcaagctgagagtattcctctt
ctacttgaaggtcacgatttactcggtcaggcacagacagggacaggaaagaccgctgcg
tttgccctacctatgttggcaaatatcgatcctgagcaacgtaagccgcaattactggta
ttggccccaacccgtgaactagctattcaggttgcagaggcgtttcaggtttatgcgagc
tttagtcaaaaaattaaagtacttccagtatacggcggtcagtcgtacgacaaccaaatt
cgccagcttaagcgcggcgttcaggttgttgtaggtacaccaggccgaatcatcgaccac
attaagcgcaaaacgctagacttaagcgaacttaagttcttagtgctagacgaagctgac
gaaatgcttcgtatgggctttatcgatgacgttgaacttattcttagccacgcaccagaa
gagcgccaaaccgcactgttctcggcaactatgcctggcccaattaagaagattactcag
cgatacttgaaagaccctaagcacgttaaaattgcgtctaaggtaagtacagctagcacc
attcgccagcgttattgccaaattgcaccacaccacaagcttgaagcgctaacgcgtatc
atggaagtggaagtgttcgacggtatgatcatattcgtacgtacgaaaaccgctacggtt
gaactagcagataaactctctgctcgtggttacgacgtagaaccactaaacggtgatatt
cctcaggcagctcgtgagcgcactgttgaaaaacttaaacagggtaaaattgatatcctt
gtcgctaccgacgttgtagcccgtggtcttgacgttgagcgtgtaagccacgttattaac
tacgatattccgtatgacagcgaatcatacgtacaccgtatcggccgtactggtcgtgct
ggtcgtcaaggtgatgcgatcttatttatctctcatcgcgaaaagcgcttgttattctct
atcgagaaaaccaccaagcaacctattgaagcaatgccaattccttcaattagcgaaatt
aatgaaacacgtttaagccgcttcaaacaatcagttgccgaagcaacccaagacgatagc
attgaatcactaatgcctattgttgagatgattaaagaagaaaacgaagcgtcccctgaa
gtattgatggcggcactgcttaaaattgcgcaaggcgacgaaccgttaattcttaaagaa
tcagatcgtccagatattaacagcaagcctcagcgcgacaaccgcgagagaaactctcgt
gaccgtgatggtcgtgagagaaagccaagagtacctcgtggaaaccgcaagcctgaagaa
ggcatgcagcgcttccgcattgaagtaggtcacgtacacggtgcgaagcctggaaatatc
gttggcgctattgctaatgaagcaaacataaattcgaagcacattggcgctatcgaaatt
tatgacaacttcagcacggtagaccttcctgacggcatgcctaaggagacgcgcgatact
ctacagggcacccgtgttgctggtcagcgtttaaacattcgcgaatggtcagatacaccg
ccggctaaaggtcgtggcgaacgtggtaaccgtggtgacagagcgcctcgcggcaatcgt
gaagaccgccctaatcgcggagatcgcgaaaaccgtaagcgtaagaactaa
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