Alteromonas macleodii Balearic Sea AD45: AMBAS45_04160
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Entry
AMBAS45_04160 CDS
T02253
Name
(GenBank) exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
amb
Alteromonas macleodii Balearic Sea AD45
Brite
KEGG Orthology (KO) [BR:
amb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amb03400
]
AMBAS45_04160
DNA repair and recombination proteins [BR:
amb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AMBAS45_04160
Archaeal homologous recombinant proteins
AMBAS45_04160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
nSTAND3
AAA_21
ABC_tran
Laminin_II
TMF_DNA_bd
cobW
SMC_N
NTPase_1
Ribosomal_L17
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AFT94310
LinkDB
All DBs
Position
965342..969079
Genome browser
AA seq
1245 aa
AA seq
DB search
MRILTLRLKNLNALKGEWKIEFTQSPFIDNGLFAITGPTGAGKTTLLDAICLALYHQTPR
LGPISTSNNDIMTRGTAECLAEVEFDIKGKAYRAFWSMRRARGKVDGNLQSADVELAEVE
SGKVLATQVRPKSEEIEKLTGLNFARFTKSMMLSQGDFAAFLNANEADRAELLEELTGTE
IYGQISQAVHQQFSDAKQKKKEFAIKLEGVTLLSDEQITQLEEEQAQTKSQVATSNQTLV
QLQNQQQWQQAFNANELTIKEASEAQQSANNAINEAKHQLDLLTQSEPAEKLRLPFLQRN
GLQQDVTRYKEKLDEKAAQLPDLKTQKAQRSSEVTHAEQGLVLTKQQSSELEKRINEQVV
PLDNQIAQLTTEQQRASENAARLRQSINALTLKRTEIENASADNKTKLVELETYLHEHHS
LSGIAEFISGWSETARYIEHDKKQLETLTQSVNNHRQALSSLDDAIAETNESLSALTQTF
DDKNAQVAKCEKALQAELSDKPSDTNSANATSKASLQQERDTKLHHWDNVLQIGHIQQQY
LALEQDRVSLSAQREDLAKQLAQQQSDRQALVDAYKQTRSNLKDVEALIALDAEVAHLRA
QLKSGEPCPVCGANEHTTSSVVIDVPETIQKRDSLKQQLDDIEQQGAQAKESVTHTEFTL
VQVNKQLEQASGQRDTLLEKWQQISSVLSADISSFEKVDINTSQSVAQFTQQFKTRLDDI
SAQLTRLEECEQALNAALQAKNEGQQLLQAKQSELAVSLQQRETLEKQFTERSAELENKT
KEVNDGILALSETMTAHGADIHNLSIDGIATWLNEKAEALKTYKHNHQLHAKLKDELQGV
SSTLLVVSRDIESAENQLKDVSEELVQLDNSLKALRDSRTTVFPEGNIPETRNKASAAQE
MAERNVNECKSRLQQTGTILSRLEAEIAQLNEQMREKEQLLTEAREHFNRQLASSPFDDE
QAFSNALLDEDTRNTLLELQKRLAQQKQQADLKLENALATEQSLKAHANAAQWQSELEEH
GAQWLDSKITQQAQQRDTLLSSLGQIEQQLSANNQARERQQQLVDEMAAFEAYYDDITYL
HSLIGSASGDKFRRFAQGLTLDNLVQLANQQLDKLHGRYQLIRKENEGLGLSVLDTWQGD
VVRDTKTLSGGESFLVSLALALALSDLVSHKTSIDSLFLDEGFGTLDAETLDVALDALDN
LNASGKMIGVISHIEAMKERIPTQLKVIKRNGVGLSALEKPYAVG
NT seq
3738 nt
NT seq
+upstream
nt +downstream
nt
atgagaatattgaccctacgccttaaaaatctaaacgccttaaaaggggagtggaagata
gaattcacccagtcgccgtttatcgacaatggcctgtttgctataactggcccaacaggg
gcaggtaaaaccacgctacttgatgccatttgtttagcgctttatcaccaaacccctcgc
ttggggccaatttcaacgtctaacaacgacatcatgacccgcggcacggcggagtgtttg
gcggaggttgagtttgatattaaggggaaagcataccgtgcgttttggagtatgcgtcgg
gctagagggaaagttgacggtaacctacaaagtgccgatgttgagctggccgaagttgaa
agcggcaaggtattggctacccaggttaggccgaaaagtgaagagattgaaaaactgacc
ggccttaattttgcccgcttcaccaagtctatgatgttgtcgcaaggggattttgctgcg
tttttaaatgctaacgaggccgaccgagccgagttgcttgaagagttaactggcactgaa
atttacgggcaaatatcacaggcagtacatcagcaatttagtgacgctaaacaaaagaaa
aaagagtttgcgataaagctggaaggcgtaaccttgcttagcgacgagcaaatcacccag
cttgaagaagagcaagcacaaaccaagagccaagtcgcaacgtctaaccaaacacttgtt
cagttacaaaatcaacagcagtggcaacaagcgtttaacgccaatgagctaaccataaaa
gaagccagtgaagcgcagcagagcgcgaataacgccatcaatgaggcgaaacatcaactt
gatcttttaacccaaagtgagccagctgaaaagcttcgcctgccattcttgcaaagaaat
gggcttcagcaagacgtaactcgttataaagaaaagctcgatgagaaggcggctcagctt
cccgatttaaagacgcaaaaggcacaacgtagttcagaagtaacccatgccgaacaaggg
ttagttcttacaaagcaacaaagcagtgagcttgaaaagcgcataaatgagcaggtagtt
ccgctagataaccaaatagcgcagctcactactgaacagcaaagagcaagcgaaaacgcg
gcacgtttaaggcagtcaataaacgcgttaacgctaaagcgcacagaaatcgaaaacgct
tcggcagataacaagaccaagcttgttgaactggaaacctacttacatgaacatcactca
cttagcggcatagcggaatttataagtggctggagtgaaacggcgcgctatattgaacat
gataaaaagcagttagaaacactgacacaaagcgtaaataatcatcgtcaggcgctttca
tccctagatgacgctatcgcagaaacaaatgagtcgttaagcgcgttaacgcagaccttc
gatgacaaaaacgcgcaagtagccaagtgcgaaaaggcacttcaggccgagctatctgac
aaaccaagtgatactaatagtgctaatgcaaccagcaaagcaagccttcagcaagagcgc
gataccaagctccatcattgggataacgtgttacagatagggcatattcaacagcaatat
ttggcactagagcaagacagagtatcgctgagtgcgcagagagaagatttagcgaagcaa
ctagcacagcagcaatctgaccgccaagccttggttgatgcttacaagcaaactcgtagt
aatttaaaagacgtagaggcgctgatcgccctggatgctgaagtggcgcacctgcgcgca
cagttaaaaagtggcgaaccgtgccctgtttgtggggctaacgaacacaccacgtctagc
gttgttattgatgtacctgaaactatccaaaagcgagatagcttaaagcagcagttagat
gatattgagcagcaaggggcgcaggcaaaagaaagtgttacgcacactgaattcactctt
gttcaggttaataagcagctagagcaggcaagcgggcaacgagatacgctgctagaaaag
tggcagcagatttcaagcgtacttagcgctgatatatcgagctttgaaaaggtcgacatt
aatacatcgcaaagtgtcgctcaatttacccagcagtttaaaactcgtcttgatgatatt
agtgcccaattaacgcgtttagaagagtgcgagcaagctctaaatgctgcattgcaggct
aaaaatgaagggcaacagttgctacaagccaaacagtcagaacttgcagtttctctgcag
cagcgcgaaaccttggaaaagcaatttaccgaacgtagtgcggagttagagaataaaaca
aaagaggttaacgatggtattttagcgctcagcgagactatgacggcgcacggtgctgat
attcacaacctgtctattgatggaattgccacgtggttaaatgaaaaagccgaagcgcta
aaaacttataaacacaatcatcagctacacgccaaacttaaagatgagttgcaaggggta
agtagcaccttgcttgtggtcagtcgtgatatcgaaagcgctgagaatcagctaaaggat
gtatctgaagagcttgtgcagctagataatagtttaaaggcgctgcgagactcgcgcaca
accgtatttcctgaaggcaatattcctgaaacaaggaataaggcaagcgctgcccaagaa
atggctgagcgaaacgtaaatgaatgcaaatctcgcctacaacaaacgggcactatattg
tctcgtttagaggccgaaattgcccagcttaatgagcaaatgcgcgaaaaagagcaatta
cttacagaggcaagagagcattttaaccgtcagttggcgagcagcccatttgacgatgag
caagcgtttagtaatgcgcttttagacgaagatacccgcaacaccttgcttgaactgcaa
aagcgattagctcagcaaaaacaacaagcggacttaaagctagaaaacgcgctagctacc
gaacaatcgctaaaagcccatgctaatgcagcacagtggcagagcgagttagaagagcac
ggtgcacagtggctcgattcgaaaattactcagcaagctcagcagcgtgacacgctgtta
tcgtctttagggcaaattgaacagcagctaagcgctaacaatcaagcccgcgaaaggcag
cagcagcttgtggatgagatggccgcgtttgaggcctattacgatgatattacttacctg
cactcgttaattggttcggccagcggcgacaaattcagacgttttgcccaaggacttact
ttggacaacttggtgcagcttgcaaatcagcagcttgataaattacacggtcgctatcag
ctaattcgaaaagaaaatgaagggttgggtttaagtgtactagacacctggcaaggtgac
gtagtgcgagatactaaaaccttgtctggcggagaaagtttcttagtgagccttgcgctg
gcgttagctttatctgacctggtcagtcacaaaaccagtatcgattcgctgtttttggat
gaaggctttggcaccctggatgctgaaactttggatgtggcccttgatgcactagacaac
ttaaatgccagcggaaaaatgattggtgtgataagccatattgaagccatgaaagagcgt
attcctactcagcttaaagtgattaaacgcaacggtgtgggcttaagtgcactagaaaaa
ccttatgcggtggggtga
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