Alteromonas macleodii Balearic Sea AD45: AMBAS45_08370
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Entry
AMBAS45_08370 CDS
T02253
Name
(GenBank) DNA topoisomerase I subunit omega
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
amb
Alteromonas macleodii Balearic Sea AD45
Brite
KEGG Orthology (KO) [BR:
amb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amb03032
]
AMBAS45_08370
03400 DNA repair and recombination proteins [BR:
amb03400
]
AMBAS45_08370
Enzymes [BR:
amb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
AMBAS45_08370
DNA replication proteins [BR:
amb03032
]
Prokaryotic type
DNA Topoisomerases
AMBAS45_08370
DNA repair and recombination proteins [BR:
amb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
AMBAS45_08370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_LysW
Zn_ribbon_recom
Gp-FAR-1
Zn_ribbon_TFIIB
Toprim_2
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
AFT95149
LinkDB
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Position
1978098..1980752
Genome browser
AA seq
884 aa
AA seq
DB search
MAKSLVIVESPAKAKTINKYLGKNFIVKSSVGHVRDLPTKALGKVEPKKPAKELKTLSEE
ERQEYLRRHEYLKLVDRMGVDPEKDWKAHYQVLQGKEKVVNELKKLAKDADTIYLATDLD
REGEAIAWHLQELLGKKDKTYQRVVFNEITKNAIQDAFSDPGELNISRVNAQQARRFLDR
VVGFMVSPLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEFWDVHADLTSQQKAA
LRMLVAKHQGNAFKPKNKAETDKALADLEGANYTVESRESKPTQSRPSAPFITSTLQQAA
STRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSQEALDSARAYISDNFGDKYLPDSPN
RYGSKEGAQEAHEAIRPSNVSISATSLGDMERDAQRLYELIWRQFVACQMTPAKYDATTI
KVAAGDYELTAKGRVLKFDGWTRVQPQLRKKGEEELMLPDVQKGDVLDLKALDPKQHFTK
PVARFNEASLVKELEKRGIGRPSTYASIISTIQDRGYVRLENKRFYAEKMGEIVNDRLME
NFDDLMSYDFTANMEQHLDDIAEGKKDWKDVLNEFYSGFYGKLLNAEKDPEEGGMRLNQA
VPAGIECDKCGREMNVRTASTGVFLGCSGYNLPPKERCTNTMNLTPGDEVVKVDDEEELE
TEALRSKKRCPKCGTAMDSYLVDETRKLHVCGNTPTCDGTLVETGTFKIKGYDGPIIECD
KCGSDMELKNGRFGKYFGCTNEECKNTRKLLRNGEAAPPKEDPVDLPELPCEKSDAHFML
RDGASGIFLAAHNFPKSRETRAPKVEELARFRDRISPKFYYLADAPQTDPDGNPAIVRYS
RKTKQQYVMSENDNGKATGWSAWYDNGKWQEQAAKKPATKAKKK
NT seq
2655 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaatcactggtcatagtcgagtcaccagccaaagcgaaaacgataaataaatat
ctcggtaaaaattttatcgtaaaaagttcggttggccacgtgcgagatcttccgacgaag
gctttaggcaaagtagagcctaaaaaaccggctaaagaactcaaaactttaagcgaagaa
gagcgtcaagagtatcttcgccgtcacgaatatttgaagcttgtagacagaatgggtgtg
gatccagagaaagactggaaagcccactatcaagtgttacagggtaaagagaaagtcgtt
aacgaacttaaaaagcttgctaaagatgctgacactatttatctcgcgaccgatttggac
cgcgaaggggaagcgattgcatggcatttacaagagctgctaggtaaaaaagacaaaact
taccagcgagtggtgtttaacgaaattactaaaaacgcgattcaagatgcgttctcagat
ccgggcgaattaaacatttctcgcgtcaacgcgcagcaggctcgtcgattcctagaccgt
gttgtaggcttcatggtatcgccacttctgtggaaaaaaattgcgcgaggcctctcagca
gggcgcgttcaatcggtagcggttaggcttgttgtagagcgtgagcgagaaattaaagcg
tttgtacctgaagagttttgggacgtacacgcagatttaactagccagcaaaaggcggca
ctacgcatgctggtagcaaagcaccagggcaatgcgttcaagcctaaaaacaaggccgaa
acagataaagcgcttgctgacttagaaggggctaactacacggttgaaagccgcgagtca
aagcctacgcaaagtcgcccttctgcaccatttattacctcaacgctacaacaagcggca
agtactcgattgggctttggtgttaagaaaaccatgatgatggcacagcgcctttatgag
gcgggctacatcacctatatgcgtacggattcaaccaatttaagccaagaggcgttggac
agtgctcgtgcgtacatttcagataattttggtgacaagtacctgcctgattcgccaaat
cgctacggcagtaaagaaggcgcgcaagaggcgcacgaagcgatccgtccttcaaacgtg
agcataagtgctacaagtttaggcgatatggaacgcgatgcacagcgtctttatgagctt
atttggcgccagtttgtggcctgtcaaatgactccagctaagtacgatgcaactactatc
aaagtggcggcgggtgattacgagctgacggcgaaaggccgcgtacttaagttcgatggt
tggactcgcgttcagcctcagcttcgcaaaaaaggcgaagaagagctcatgttgcctgat
gtacaaaaaggcgatgtgcttgacttaaaagcgcttgatcctaaacagcacttcaccaag
cctgtagcgcgatttaatgaagcatctttggttaaagagcttgaaaaacgcggtattggt
cgtccatcgacctacgccagtattatttcgacgattcaagatcgcggctatgtgcgctta
gagaacaagcgtttttatgccgagaaaatgggcgaaatcgtaaacgatcgtctgatggaa
aactttgacgatttaatgagctatgatttcactgccaacatggagcaacatcttgatgat
attgctgaaggcaagaaagactggaaggacgtgctcaatgagttttatagcggcttctac
ggtaaactgttaaacgctgaaaaagaccctgaagagggcggtatgcgcctgaatcaggcg
gtacctgcaggtattgagtgcgacaaatgcggccgtgaaatgaacgtaagaactgcgtca
actggcgtattcttgggctgttcaggctacaatttaccaccgaaagagcgctgcacgaac
accatgaatttaacgccaggtgatgaagtcgtgaaagtagacgatgaagaagagcttgaa
acagaagcgcttcgctctaaaaagcgttgtcctaagtgcggcacggcaatggacagttat
ctggttgacgaaacccgtaaacttcatgtgtgtggtaacacgccaacatgtgatggcacc
ttggttgaaacaggcacatttaaaataaaaggctatgatggccctattattgagtgtgac
aaatgtggcagcgatatggagcttaaaaacggtcgttttggtaagtatttcggctgtacc
aatgaagagtgtaagaatactcgtaagcttcttagaaatggcgaagctgcgccaccaaaa
gaagacccggtagatttacctgagcttccgtgtgaaaagtctgacgcgcattttatgcta
cgtgatggcgcttcgggaattttcttagcggcgcataattttccaaagtcgcgtgaaact
cgtgcaccgaaagtggaagaacttgctcgctttagagatagaatttcgccgaaattctac
tatcttgctgacgcgccacaaacggaccctgatggtaaccctgcaatagttcgatacagc
aggaaaaccaaacagcaatacgtgatgtctgaaaatgacaacggtaaagcaacaggatgg
tctgcatggtacgacaatggcaaatggcaggaacaagccgctaaaaagccagcgactaaa
gccaagaagaagtaa
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