Alteromonas macleodii Balearic Sea AD45: AMBAS45_12530
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Entry
AMBAS45_12530 CDS
T02253
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
amb
Alteromonas macleodii Balearic Sea AD45
Brite
KEGG Orthology (KO) [BR:
amb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
amb03016
]
AMBAS45_12530
Enzymes [BR:
amb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
AMBAS45_12530
Transfer RNA biogenesis [BR:
amb03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
AMBAS45_12530
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
AFT95971
LinkDB
All DBs
Position
complement(2928458..2929615)
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AA seq
385 aa
AA seq
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MQYQLITTSEQLEKVCTAAQRQEAVALDTEFVRTKTLTPHLGLIQLYDGHQLVLIDPLAI
DNMQPFIDLMENTEVVKVLHSCSEDIEAFLTAFDTVPTPVFDTQLAGSILDMGPSLGYAK
LVELLCDISLDKGESRTDWLARPLREAQLSYAANDVLYLLPCYQQLASKVQEAGKVHWIY
QEIALLVDKKRAQMPEDFAYLSIKNNWRLNSEQLTVLQALAAWRLNTARKKDLALNFVFK
EGHLFEAAQRLIDSKSGLSRINGVNHQSVRRYGDTIITLIEEARAKYAQTPEKLRLPVVL
RLIDIAKYKKTLAELKVISDQIAKDNAVNSDVIASKKQLNQLLKWYWFSVDETRVQGLMP
DVLSTWREPLFRSHVTRLLGDAPAQ
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atgcaatatcaattaattacaacatctgaacaactcgaaaaagtgtgcactgccgcacag
cgtcaagaggcggtagccttagacactgaattcgtaagaacgaaaacccttactccgcat
ctaggcctaatacagctttacgatggccatcagctggtactcattgacccgctcgccata
gacaatatgcagccgtttatcgatctcatggagaataccgaagtcgtgaaagtgctgcac
tcgtgttctgaagacattgaggcgttccttaccgcctttgataccgtaccaacgcctgtg
ttcgacacgcagcttgcgggaagtattttggacatggggccgtcacttggctatgcaaag
cttgtagagttgctgtgtgatatcagtttggacaaaggggagtcgcgaaccgattggtta
gccagacctctacgtgaagcgcagctgagctacgcagcgaatgatgtgctgtatttactg
ccttgctaccaacagttagccagtaaagtacaagaggcggggaaagtgcactggatttac
caagagatcgctttgttagttgataaaaagcgcgctcaaatgcctgaagattttgcgtac
ttaagcattaagaataactggcgattgaacagcgagcagctcactgtattacaggcacta
gcggcatggcgtttaaataccgcacgaaaaaaagatctggccctaaactttgtgttcaaa
gaagggcatttgtttgaagcggcgcagcgtcttatcgatagtaaatctggcctttcgcgt
attaacggcgtgaatcatcagtcggtacgccgctacggcgacaccatcatcacgctaatt
gaagaggcgagagcaaagtacgcgcaaacaccagaaaagctcaggcttccggttgtgctg
cggttaattgatatcgccaagtacaaaaaaacgctggccgagcttaaagttatcagcgac
cagatagcgaaagacaatgctgtaaatagtgacgttattgcctctaaaaaacagctgaat
caactgttaaaatggtattggttttcggttgatgagacccgcgtgcagggactaatgccc
gatgtactgtcgacatggagagagccattgtttcgctctcacgtaacccgtttacttggc
gacgctccggcccaatag
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