Alteromonas macleodii Balearic Sea AD45: AMBAS45_14270
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Entry
AMBAS45_14270 CDS
T02253
Name
(GenBank) RecQ domain-containing protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
amb
Alteromonas macleodii Balearic Sea AD45
Pathway
amb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AMBAS45_14270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amb03019
]
AMBAS45_14270
03400 DNA repair and recombination proteins [BR:
amb03400
]
AMBAS45_14270
Enzymes [BR:
amb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AMBAS45_14270
Messenger RNA biogenesis [BR:
amb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AMBAS45_14270
DNA repair and recombination proteins [BR:
amb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AMBAS45_14270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
ResIII
RecQ_Zn_bind
SWI2_SNF2
TniB
AAA_22
Epimerase
PAS
Motif
Other DBs
NCBI-ProteinID:
AFT96317
LinkDB
All DBs
Position
3339447..3341438
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AA seq
663 aa
AA seq
DB search
MYSDPNILQQLFGFSAFREGQKEAVESLLGGNSTLAIFPTGSGKSLCYQFVATQLPHLTL
VVSPLLALMKDQLEFLHSKGIAAASIDSTLTPEQNKQVMNDVRSGQCKILMVSVERFKNE
RFRQFIESVPVSMLVVDEAHCISEWGHNFRPDYLKLPAYQKELNIPLVLLLTATATKKVK
EDMAARFDIAPSNIIQTGFYRPNLNLHVRPVHEPYKNQALLEEIQKQQGAGIVYVTLQNS
AEEVARFLQQQGFAAKAYHAGLDSGVRQGIQQDFMHNKLQVVVATIAFGMGIDKSDIRFV
VHYDLPKSIENYSQEIGRGGRDGKAANCTVLANLDGLVTIENFVYGDTPDKSAIQRVIDD
ISAQASAHINSAAHNDLPTNGENSVYQWETQINSLSSASNIRQLPLKTLLVQLELANVIR
PLYAYFAEYKFRFISEKTTILGLFSEERARFLDAVFTHSSMKKVWGIVDFDSIYQHYGAE
RARVVAALEYLHEHNHIELASRLITDVYRVDYEKLQDADLANNLARYFAENERKEIERIA
ALVSFFELNTCLSYNLSAYFDDTQVPNECGHCSVCEGNVAKLSYSTPIPKPNFDQLSQAM
TALKTHLIGKFDGPITSSIYCRFLTGMTMPLFTRLKIRQVKGFGSCEHCRYADVKAMVDA
INQ
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgtactctgaccccaatattttgcagcagctgtttggtttttcggcgtttcgcgaggga
cagaaggaggcagtggaatcactgcttggtggaaattcaacgctagcgatttttcccact
ggctcgggcaaatcattgtgctatcagtttgttgctacgcaattgccgcacttgaccttg
gttgtgtccccactattagcactgatgaaagatcagctggagtttcttcatagcaaaggc
attgcagcagcgagtatcgactctacgctaacgcccgagcagaacaagcaagtgatgaac
gacgtgcggtcaggccagtgtaaaattctgatggtgtcggtggagcgctttaagaacgaa
cgctttcggcagttcattgagtctgttccggtaagtatgctagttgtcgatgaagcacac
tgtatctctgagtggggccacaactttcgccctgactacttaaaactccccgcgtatcaa
aaagagcttaatattccgttagtacttctgctcacagctactgccactaaaaaagtaaaa
gaagatatggcagcgcgctttgatattgcgccatccaatattattcaaacagggttttat
cgacccaacttgaatttgcatgttcgccctgtacatgaaccatataaaaaccaagcctta
cttgaagaaattcaaaagcagcaaggcgcgggtattgtttatgtcacgcttcaaaatagt
gcagaagaagtagccaggttcttacagcaacaagggtttgctgcgaaggcttatcacgct
ggtctcgacagtggtgtaagacaaggtatccagcaagattttatgcacaataagcttcaa
gttgttgtagctaccattgcatttggcatgggcattgataagtcggatattcgctttgtt
gttcattacgacttaccaaagtcaattgaaaactacagccaagaaattggccgtggtgga
cgagacggtaaagccgcaaactgcacggttttagctaaccttgacgggctagtcaccata
gagaacttcgtttatggcgatacaccagataaaagcgccattcaacgcgtaatagatgat
atcagcgcacaggcctctgctcacataaattcagcggcgcacaatgatttacctaccaac
ggcgaaaacagtgtttaccagtgggaaacgcaaataaatagtttatcgagtgccagcaac
atacgacagcttccgcttaaaaccctgctggtacagcttgaactcgctaacgttattcgc
cctttgtatgcctattttgctgaatataaatttcgctttatttcagagaaaaccaccata
ctcggccttttctcagaagaacgggctcgctttctagacgccgtattcactcattcaagt
atgaaaaaggtgtggggcattgtagatttcgacagtatttatcagcattacggcgcagag
cgtgcaagagtggtggccgcactagagtatttacatgaacacaatcatattgagcttgcc
tcgcgcttaataactgacgtataccgcgttgactacgaaaaactgcaagatgccgactta
gctaataacctggctcgctatttcgctgaaaacgagcgcaaagaaattgagcgcattgcc
gcactggtaagcttcttcgaacttaatacctgtttaagctacaacctatcagcgtatttt
gatgatactcaagtgccaaacgaatgtgggcactgtagtgtttgcgaaggaaacgtggct
aagcttagctattcaactccaattcctaaaccaaattttgaccaattatctcaagccatg
acggctctcaaaacccatttaatcggtaaatttgacggccctattacttcgtctatttat
tgccgctttctaaccggtatgactatgccgttgttcactcgcttaaaaataaggcaggtc
aaagggtttggtagctgcgaacactgccgatacgctgatgtgaaagcaatggtagacgct
ataaatcagtga
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