Alteromonas macleodii Balearic Sea AD45: AMBAS45_15065
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Entry
AMBAS45_15065 CDS
T02253
Name
(GenBank) putative excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
amb
Alteromonas macleodii Balearic Sea AD45
Pathway
amb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
amb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AMBAS45_15065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amb03400
]
AMBAS45_15065
DNA repair and recombination proteins [BR:
amb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AMBAS45_15065
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AMBAS45_15065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_DNA-bind
AAA_21
nSTAND1
AAA_29
AAA_16
DnaJ_CXXCXGXG
RsgA_GTPase
nSTAND3
DUF4350
AAA_22
SLFN-g3_helicase
Viral_helicase1
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
AFT96476
LinkDB
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Position
complement(3534386..3536935)
Genome browser
AA seq
849 aa
AA seq
DB search
MHNDEGKIHVRGARVHNLKNISIDIPRNEVVVFTGVSGSGKSSLAFGTLYAEAQHRYLDS
ISPYARRLIEQVEKPDVGAIEGLPPAVGLHQRRGAPSVRSSVGSVTTLSNSLRMLYSRAG
DYPEGQNIVYADGFSPNTPEGACEHCDGIGKVFDTQAHRLVPDDSLTIREGAVAAWPGAW
QGKNLVRVLLSLDIDVDIPWRELPQKTRDWILYTDEMPQLPVYRNYNLAQTRKAQQEGEP
ASYNGKFISARRHVLDTFKTSQKEKMKQRIAPFISVEACPVCHGKKLKQNALAVKIDGLD
IIDFSRLPLQQVYEKLQALRNSVNGDTSERGQVIRNITGDIIERLKPIIALGLHYLSLDR
STTSISVGELQRLRLATQLKSNLFGVVFVMDEPSSGLHPRDVEGLIRALHNITETGNSLL
VVEHNPYVIKGANWVVDVGPRAGVNGGELVYSGPVKKMANIKNSPTADYVFNNKALSQRI
KRKSSGALRLKDVSRNNVSHVDIDIPLGVMTCVTGVSGSGKSSLISQALVELVKDGLSPV
EKEGKRAKETKETRKTKELLTDANSLLAQDTFLHESELQQGFIESGLEELSRIVVVDQSP
IGRTPRSTLATYTGIFDQIRGLFASTEEAKSRGYDAGHFSFNVAKGRCPHCEGLGVVSVE
LLFMPSVYSTCTVCNGQRFNDNVLEVGYNKHSIADVLSLTVEEALSVFSGNQVITRGLKT
LMNVGLGYLTLGQSATELSGGEAQRIKLASELKRAQNTNTLYVLDEPTTGLHLSDTSLLM
QHLTTLVEAGNTVVMVEHNMQVAGSCDHIIDMGPGAGGEGGEIVAEGRPEEVAKVQQSAT
APFLKASLA
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
gtgcacaatgatgagggaaaaatccacgtacgcggtgcccgtgtacacaacttaaaaaat
attagtatcgatataccgcgaaatgaagtggtagtgtttaccggtgtatctggctcagga
aaatcttctttggctttcggtacgctttacgcagaagctcagcaccgctatttagattca
atatcaccttatgccagacggttgattgagcaggtggagaaacctgacgtaggcgcgatt
gaaggcctacctcctgctgtgggcctccaccagcgccgtggcgcaccttccgttcgttct
tccgttggcagtgtcaccacgctatctaatagtctgagaatgttgtattcccgggcaggc
gactatcccgaagggcagaacatagtttacgcagacggattttctccaaatacgcctgaa
ggtgcatgtgaacactgtgacggtattggaaaagtttttgatacgcaagctcatcgtctt
gtacccgatgatagtctcaccatacgtgagggcgctgttgcagcttggcctggggcgtgg
cagggcaaaaacctcgtgagggtactgttatcgcttgatattgatgttgatattccatgg
cgtgaactgcctcaaaaaacacgcgactggatcctatataccgacgaaatgcctcagtta
cctgtatatcgaaactataatctagcgcaaacccgtaaagcacaacaagagggtgaacct
gccagctacaacggcaagtttatcagtgcgcggcgtcatgtgctcgataccttcaaaacg
tctcaaaaagagaaaatgaagcagcgaattgctcctttcatatctgttgaagcatgtccg
gtttgtcacggtaaaaagcttaagcaaaatgcactggcagtaaaaattgatggcttagat
attattgatttttctaggctgccactacagcaagtttacgaaaagcttcaggcgttaaga
aattcagtcaacggcgatacgtcagagcgtggtcaggtgatacgcaatattacgggcgac
attattgaaagattgaaaccgataatagcgcttgggctccattacctttcgttagataga
agtacaacaagtatctcagtaggcgaactgcagcggttgcgcctggcgacacaacttaaa
tcaaacttatttggcgttgtctttgtgatggatgagccgtcatcaggtcttcaccctcgc
gacgtcgaagggcttattcgggcgcttcataatattaccgaaacgggaaattcgttgctt
gttgtcgagcacaatccttacgtcattaaaggagccaactgggttgtggacgtggggccg
cgagcgggagttaacggcggtgagcttgtttatagtgggccagttaagaagatggcaaac
ataaaaaactccccaacggcagactatgtttttaacaataaagccctaagccagcgtatc
aaacgtaaatcatcaggggcattgcgtttaaaagacgtgtccagaaataatgtcagccat
gttgatattgatattccacttggcgtaatgacctgtgttacaggcgtttccggctctgga
aaatcgagtttgattagccaagcattagttgagctagtcaaagacggtttaagtccagtc
gagaaagaagggaagcgagcgaaagaaacgaaagagacgagaaaaacgaaagaactgctt
accgacgccaactctcttctcgctcaagacacttttttacacgaaagtgagctgcagcaa
ggctttattgaaagcggacttgaagagttaagtcgtatagttgtggtcgatcagtctccc
atcggcaggacaccccgttcaactttggcaacctataccggcatatttgaccaaatcaga
ggtttatttgcttcaaccgaagaagcaaaatcccgtggttacgatgcgggtcatttctcg
tttaacgttgcaaaagggcggtgcccacattgtgaaggcttgggtgtggtatcggtagaa
ctgttgtttatgccgagtgtttattccacctgcaccgtttgtaacggtcagcgttttaac
gataacgtactggaagttggttacaacaaacattccatcgctgatgtattatcgcttacg
gttgaagaagcactatctgtatttagtggtaatcaagttattacgcggggactaaaaacg
ctaatgaacgtagggcttggctatctaacccttgggcaaagtgccactgagttatcaggc
ggcgaggctcagcgtattaaattagcatcagaacttaagcgcgctcaaaataccaatact
ctttacgtgcttgatgaacctacaacaggtttacatctttcagacacttcgctacttatg
cagcacttaaccacgcttgttgaagcgggaaatacggtggtgatggttgagcacaatatg
caggtggctgggtcatgtgaccacattatagatatggggccaggcgctggtggcgaggga
ggagaaatagttgctgaaggtcgaccagaggaggttgctaaagtccagcaaagtgcaaca
gccccatttttgaaggcgagtttggcttaa
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