Alteromonas mediterranea DE: MADE_000001021960
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Entry
MADE_000001021960 CDS
T00747
Name
(GenBank) DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
amc
Alteromonas mediterranea DE
Brite
KEGG Orthology (KO) [BR:
amc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amc03032
]
MADE_000001021960
03400 DNA repair and recombination proteins [BR:
amc03400
]
MADE_000001021960
Enzymes [BR:
amc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
MADE_000001021960
DNA replication proteins [BR:
amc03032
]
Prokaryotic type
DNA Topoisomerases
MADE_000001021960
DNA repair and recombination proteins [BR:
amc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
MADE_000001021960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
AGV53777
UniProt:
T2DLR5
LinkDB
All DBs
Position
2081669..2082721
Genome browser
AA seq
350 aa
AA seq
DB search
MKKRIKGYCNVHEDDSHLSIKRIACGNKRFYYRYTSGKKVTGQRVISRIKKLVIPPNWRD
TFISRDSKASVQAIGYDEKGRKQYIYHEKWHEQQQVQKFERLIAFGNALPAFREHCISLI
SQSSWTLERACALVCLLLDYTGARVGNTQYSKENSTYGLTTLRRKHVQAQCDDSVELAYI
GKHGKPRTLKVNDPELASLICDCAQQQGYCLFRYQDHRKQWHDVTSEDVNAFIHEELSEQ
FSCKDFRTWASSRFALTVMPDVYERVASSKTKKWESTLSKTVSAELGNTPAVCRKYYIHP
KLFAIKNQGEAFENTLNRVRSLAGEDCTQIAHLLPVEKLLLDVISTKSNE
NT seq
1053 nt
NT seq
+upstream
nt +downstream
nt
ttgaagaaacggataaaaggctattgtaatgtgcatgaagatgatagccacctatcaatt
aagcgcatagcgtgcggaaataaacgtttttactatcggtacaccagtggtaagaaggtt
accggtcaacgtgtgataagccgcataaagaaactagttatcccaccgaattggcgagat
acctttatcagccgcgacagtaaggcgagtgttcaggcgattggatacgatgaaaaaggc
cgtaagcaatacatttatcatgagaagtggcatgagcaacagcaggtacaaaagtttgag
cggttgattgcttttggcaatgcccttccagcgtttcgagagcattgcatttctctcatt
tctcaatcttcctggacgctagagcgcgcatgcgcgcttgtttgtcttttattagactac
accggcgctagggtagggaatacgcaatacagtaaagagaacagcacctatgggcttacg
acgctgcgacgcaaacacgttcaggcgcagtgcgacgacagtgtagaacttgcgtacata
ggaaaacatgggaaaccgcgaaccctgaaagtgaatgacccagaattggcgtctttaata
tgtgattgcgcacaacaacaaggttattgcttatttcgctatcaagatcaccgtaaacaa
tggcacgatgtaacgagcgaagatgtgaacgcgtttatacatgaggagctgagcgaacaa
tttagttgtaaggactttaggacttgggcgtcgagccgttttgccctaacggtgatgccc
gacgtatatgaacgtgtagcaagttcaaaaactaaaaagtgggaaagcacattaagtaaa
accgtatcagctgaactaggcaatacgccagcggtttgcagaaaatattatattcacccg
aaactatttgctattaaaaaccagggggaagctttcgaaaacacgctaaatcgtgtgcga
tcgctggctggcgaagattgtacacagattgcgcacttactgcctgtagaaaagcttctt
ttggatgttatttctactaagagcaatgagtga
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