Alteromonas mediterranea DE: MADE_000001023295
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Entry
MADE_000001023295 CDS
T00747
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
amc
Alteromonas mediterranea DE
Pathway
amc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
amc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MADE_000001023295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amc03021
]
MADE_000001023295
03400 DNA repair and recombination proteins [BR:
amc03400
]
MADE_000001023295
Enzymes [BR:
amc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MADE_000001023295
Transcription machinery [BR:
amc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MADE_000001023295
DNA repair and recombination proteins [BR:
amc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MADE_000001023295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AGV53912
UniProt:
T2DM55
LinkDB
All DBs
Position
complement(4058415..4062587)
Genome browser
AA seq
1390 aa
AA seq
DB search
MKDLLKFLKQQNKTEEFDNIRIGLSSPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESYVVTEPGMTTLERSQLLNEEEYLDALEEHGDEFDAKM
GAEAVFDLLTVLDVDADVAAMREELPSINSETKRKKITKRLKLLESFQQSGNKPEWMIMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKLVEREAPEVWDVLDDVIREHP
VLLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTIEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYLTRDKVNGLGEGMVFTSPNEAEKAYRTG
NAELHSRVKVRITEYDIDEDGNKTEKVTLTDTTVGRAIFSLILPKGLPFEIINQAMGKKQ
ISRLLNACYRTLGLKDTVIAADQIMYTGFHYAMIAGASVGIDDMVIPAAKKEIIDAAEAE
VIEIQEQFQNGLVTAGERYNKVIDIWSNANEKVAKAMMDNLKTDIVINRDGEEEEQQSFN
SVYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVITNDDCGTFEGVQMTPLIEGGDVVEPLRERVL
GRVVAEDVIKPGTDEVLVERNVLLDEALVDMLEANSVDQIQVRSVITCDNDFGVCAKCYG
RDLARGHMVGSGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRASAENSVQVKTAGSLKL
HNAKFVRNSDGKVVIVSRSTELTVIDEQGREKERYKVPYGAVLSVDDGATIAAGDVVANW
DPHSHPIITERAAKISFADIDDSNTEMQQDELTGLTRIVVKDLAKVNSKEPKLILESDEF
GLQEIRLPSFTTIEAKEGKVANEGDVLARIPQESSKTRDITGGLPRVADLFEARKPKEPA
ILAEISGTIGFGKETKGKKRLVITPAEGDAYEEMIPKWRQLNVFEGEKVEKGEVIADGPE
SPHDILRLRGISAVANYIVNEVQEVYRLQGVKINDKHIEVVIRQMLRKCVITSPGDTQFL
EGEQVEVSNVKVANREIEKLGKIPAQYETQLLGITKASLSTESFISAASFQETTRVLTEA
AVQGKEDDLRGLKENVIVGRLIPAGTGFAYHERRAQRRKEQIEEMSVSAADAEQALTEAL
NAGADEDTAE
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctaaagcaacaaaacaagactgaagaattcgataatatt
cgaatcggtctgtcttcacctgacatgattcgttcatggtcattcggtgaagttaaaaag
cctgaaacaattaactaccgtacgttcaagcctgagcgtgacggtctgttctgtgcgcgt
atcttcggtccggtaaaagactatgaatgtctttgcggcaagtacaagcgccttaagcac
cgtggtgttatctgtgagaagtgtggcgttgaagttacactgactaaagtacgtcgtgag
cgtatgggtcacatcgagctagctagcccggttgcacacatctggttccttaaatcactt
ccgtctcgtatcggcttaatgcttgatatgacacttcgtgatatcgaacgcgtactttac
tttgaatcatacgtggtaacagagccaggtatgacgacccttgagcgcagccaacttctt
aacgaagaagagtacttggatgcacttgaagagcacggtgatgagtttgatgcgaagatg
ggtgctgaagcagtattcgatcttctaacagtacttgacgtagacgcagacgttgcggct
atgcgtgaagagctgccttcaatcaactctgaaacgaagcgtaagaaaattactaagcgt
cttaagttgcttgagtcattccagcagtctggcaacaagccagagtggatgattatgacg
gtacttccggtacttccaccggaccttcgtcctctagttccactagatggcggccgtttt
gcaacgtctgaccttaacgacctataccgtcgtgtaattaaccgtaacaaccgtcttaag
cgtcttctagacctagctgctccagacattatcgtacgcaacgaaaagcgtatgcttcaa
gagtctgttgatgcgcttctagataacggacgtcgtggccgtgcgatcactggttctaac
aagcgtccacttaagtcgcttgcagacatgatcaagggtaagcaaggtcgtttccgtcaa
aaccttcttggtaagcgtgttgactattctggccgttctgtaattaccgttggtccaacg
ctacgtcttcaccagtgtggtcttcctaagaagatggcacttgagctatttaagccgttt
atctacggtaagctagaaggtcgtggtcttgcgacaacaattaaagcagctaagaagctt
gtagagcgcgaagcaccagaggtttgggacgtactagatgacgttatccgcgaacacccg
gtactacttaaccgtgcacctacacttcaccgtttgggtatccaagcattcgaacctaca
ctaatcgaaggtaaagcgattcagcttcacccgctagtgtgtgcggcgtataacgccgac
ttcgatggtgaccaaatggcggtacacgtaccgttgacgatcgaagcacagctagaagca
cgtgcacttatgatgtcaacgaacaacatcctgtcgccagcgaacggtgagccaatcatc
gtaccttcacaggacgttgtattaggtctttattacctgacgcgtgacaaagtaaacggc
ttaggcgaaggcatggtatttaccagcccgaatgaagcagaaaaagcataccgtacaggt
aatgcggagcttcactcacgcgttaaagtacgtattactgagtacgacatcgatgaagat
ggcaacaaaactgagaaagtaacgcttactgacactactgttggtcgtgcaattttctca
ttgatccttccaaagggtctaccgtttgaaatcatcaaccaagccatgggtaaaaagcag
atttcaagactattgaatgcttgctaccgtacgctaggcttgaaagatacagtaattgct
gctgaccaaatcatgtataccggtttccactacgcgatgatcgcgggtgcgtcagttggt
atcgacgatatggtaatccctgctgctaagaaagaaatcatcgacgcggcagaagcagaa
gttatcgaaattcaggaacagttccaaaacggtcttgttaccgcgggtgagcgttacaac
aaagttatcgatatctggtcaaatgccaacgaaaaagttgctaaggccatgatggataac
cttaagactgacatcgtaattaaccgcgatggcgaagaagaagagcagcaatcatttaac
tctgtttacatgatggccgactcgggtgctcgtggtagtgccgctcagattcgtcagcta
gcaggtatgcgtggtctgatggctaagccagatggctcaatcatcgaaaccccaattacg
gcgaacttccgtgaaggtctgaacgtactacagtacttcatctcaactcacggtgcgcgt
aaaggtctagcggataccgcacttaagacagctaactcgggttacctaacacgtcgtcta
gtagacgttgcacaggacttggtaatcactaacgacgactgtggcacattcgaaggtgtt
caaatgacaccactaatcgaaggtggtgacgttgttgaaccacttcgcgagcgtgtacta
ggtcgtgtagttgctgaagatgttattaagcctggtactgatgaagtattggtagagcgt
aatgtactactagacgaagcgctagtagacatgcttgaagccaactctgttgaccaaatc
caagtacgctctgttatcacgtgtgacaacgacttcggtgtttgtgctaagtgttacggt
cgtgaccttgcacgcggtcacatggtcggtagcggtgaatcggttggtgttattgcagca
caatcaatcggtgagccaggtacacagcttaccatgcgtacgttccacatcggtggtgcg
gcatcaagagcatcagcagaaaacagcgtacaagttaaaactgcgggtagccttaagcta
cacaacgcgaaattcgtacgtaattctgacggcaaagtggttatcgtttctcgctcaaca
gaacttactgttatcgatgagcaaggccgcgagaaagagcgctataaagtaccttacggt
gcagtacttagcgtggatgacggtgcaactattgcagctggcgacgttgttgctaactgg
gatccgcatagtcacccaatcatcactgaacgtgcagctaagattagcttcgcagacatt
gatgactctaacacagagatgcagcaagacgagcttactggtctaacccgtatcgtagtt
aaagacctggctaaagttaactctaaagagcctaagctaattcttgaaagcgacgagttc
ggtcttcaagaaattcgtcttccaagcttcacaacgattgaagcgaaagaaggcaaagta
gctaacgaaggtgacgtgcttgcacgtattcctcaggaaagctcgaagactcgtgatatc
accggtggtctaccgcgcgttgcggacctatttgaagcacgtaagcctaaagagcctgca
attcttgcagaaatctcaggtactatcggcttcggtaaagagaccaaaggtaagaagcgt
cttgtaattacaccagctgaaggtgatgcatacgaagagatgattcctaagtggcgtcag
cttaacgtgttcgaaggtgagaaagtggaaaaaggcgaagttatcgccgacggtccagag
tctccacacgatatcctgcgtctacgtggtatctcagcagtagcaaactacatcgtgaac
gaagttcaggaagtataccgtctacagggtgttaagattaacgataaacacatcgaagta
gttatccgtcagatgctacgtaagtgtgttatcactagtcctggcgatacgcagttcctt
gaaggcgaacaggttgaagtatcgaacgttaaagtggcgaaccgtgaaattgaaaaactc
ggtaagattccagcgcagtacgaaacacagctgcttggtatcactaaagcgtcactgtct
actgagtcatttatctcagcagcatcgttccaagaaacaacccgtgtgctaactgaagct
gcggttcaaggtaaagaagatgacctacgcggtctgaaagaaaacgtaatcgttggtcga
ctcattccagcgggtaccggtttcgcttaccacgaacgccgcgcacaacgtcgcaaagag
caaatcgaagaaatgtcggtatctgccgctgatgcagaacaggcactaaccgaagcgctt
aatgccggtgcagacgaagatactgccgaataa
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