Alteromonas mediterranea DE: MADE_1000965
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Entry
MADE_1000965 CDS
T00747
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
amc
Alteromonas mediterranea DE
Pathway
amc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MADE_1000965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amc03019
]
MADE_1000965
03400 DNA repair and recombination proteins [BR:
amc03400
]
MADE_1000965
Enzymes [BR:
amc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MADE_1000965
Messenger RNA biogenesis [BR:
amc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MADE_1000965
DNA repair and recombination proteins [BR:
amc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
MADE_1000965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
CRS1_YhbY
PB4_spike
Motif
Other DBs
NCBI-ProteinID:
AEA96342
UniProt:
F2G2Y2
LinkDB
All DBs
Position
complement(209656..211497)
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AA seq
613 aa
AA seq
DB search
MTTAIAPSESSSNTQSAKTPERILKDVFGYDAFRDGQGEVIHRVCEGKDALVLLPTGGGK
SLCYQIPALVRNGTAIVVSPLISLMQDQVEQLKALGVKAAYLNSTLEADEQAGINDALQA
GKLDLLYVSPERLMQYYFQQSLANADIALFAIDEAHCVSHWGHDFRQDYRALGQIKSRFP
SIPVIGLTATADTATQADILTQLNLHAPLVYKGSFDRPNIRYRVMSKYKAFDQVVAYVKQ
QEGSGIIYCNSRAKVDDLHAKLFKQGFRCAAYHAGMDSDERELVQRQFLNDKIDIVVATV
AFGMGINKSNVRYVVHHDVPRSVESYYQETGRAGRDGLESEALLLFDEKDAARVKQWIEQ
GEIAERNQIELQKFAAMEAFSEAQTCRRQVLLNYFSQFSDSACGNCDICLDPPKMIDGLV
IAQKVLSCVLRLSQQASSQYVIDVLRGKQLRRLQEAGHHQLSTYGIGKDKSDSYWHNIIN
QLVHKGLIRVDITAHAALRLTEAARPVLKGEVDVQLAVPRLEFKPDKKKAKQAPANYDRT
LFTRLKHLRKVLAEENEVPPYVVFSDATLVDMACKLPTTRNTMLDVSGVGQTKLERYGEA
FIQLIDDYINREH
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgacaactgcaattgctccatctgaatcaagctccaacacgcaaagtgcaaaaacacca
gaacgcattttaaaagatgtcttcggttacgacgcttttcgcgacggtcagggcgaagtc
attcaccgcgtatgtgaaggtaaagacgcactcgtgctgctgcctactggtggcggtaaa
tcgctgtgttatcaaattcctgcgctggtgcgaaatggaacagccattgttgtgtcgccg
cttatatcattgatgcaagaccaggtagagcagctgaaggccttaggtgtaaaagcagct
tacctaaactccacgttagaagccgatgagcaagcgggtattaacgacgcattgcaggca
ggaaagctagacctgctttatgtgtcacctgagcgtttgatgcagtactattttcagcag
tcgcttgccaatgccgacattgcgctttttgctatcgatgaggcgcactgtgtgtctcat
tgggggcacgactttaggcaagactatcgcgcccttggccaaattaaatctcgctttccc
tctattcccgtaatcgggctaaccgccaccgcagatacggcaacgcaagctgacatactc
acccagcttaacttgcacgcccctttggtttacaaaggtagtttcgatagacccaacata
cgctatcgggtaatgagcaagtacaaggcattcgaccaagtggttgcttatgttaagcag
caggaaggcagcggtattatttactgcaacagccgggcaaaagtagacgaccttcacgcg
aagctattcaaacaaggctttcgatgtgcggcctatcacgcagggatggatagcgacgag
agagagcttgttcagcgccagtttctcaatgacaaaatcgatatcgttgtagccacggtg
gcctttggcatgggcattaataaatctaacgtgcgctatgtggtgcatcacgatgtgccg
cgaagtgtagaaagctactaccaagaaacaggccgcgctgggcgagacggtctggaatct
gaagccttattattgtttgatgaaaaagacgctgcccgtgtaaagcagtggatagagcaa
ggtgagattgccgagcgcaaccaaatagaattgcagaaattcgcagcaatggaagctttc
tctgaagcccaaacctgccgtaggcaagtcttgctaaactacttttctcagtttagtgac
agcgcctgtggcaattgtgatatttgcctagacccgccaaagatgattgacggtttggtt
atcgctcaaaaagtactgtcttgtgtactgcggctttcgcagcaggcgtcaagccaatac
gtcatcgatgtgctgcgcggaaagcagcttaggcgacttcaagaagccgggcaccaccag
ctttctacctacggtataggtaaagataaatcagatagttattggcacaacattatcaat
caacttgtgcacaaaggccttattcgtgtagatattaccgctcatgcggccttgcggtta
acagaagcggcccgcccagttcttaaaggcgaagtggacgttcagcttgctgtaccgcga
cttgagtttaaaccggataagaaaaaagcgaagcaagcgcctgccaactacgacagaacc
ttattcactcgtcttaagcacttacggaaagtgttggcagaagagaatgaggtgccgccc
tacgtggtatttagtgacgcaaccttagttgatatggcgtgcaaactgcctaccacgcgc
aacactatgctagatgtgagcggtgtaggccaaaccaagctagagcgctacggcgaggcc
tttatccaacttatcgacgattatatcaaccgcgagcactag
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