KEGG   Alteromonas mediterranea DE: MADE_1002860
Entry
MADE_1002860      CDS       T00747                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
amc  Alteromonas mediterranea DE
Pathway
amc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:amc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    MADE_1002860 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:amc03021]
    MADE_1002860 (rho)
   03019 Messenger RNA biogenesis [BR:amc03019]
    MADE_1002860 (rho)
Transcription machinery [BR:amc03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     MADE_1002860 (rho)
Messenger RNA biogenesis [BR:amc03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     MADE_1002860 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N NACHT OB_RNB AAA_25 AAA_22 AAA S1CSD-TOTE-2
Other DBs
NCBI-ProteinID: AEA96720
UniProt: F2G7E0
LinkDB
Position
601602..602867
AA seq 421 aa
MNLTELKNKPISELVNLAEEMGLENMARARKQDIIFSILKTHAKSGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIRPPKDSERYFALLKIREVN
FDKPENSRNKILFENLTPLHAADRLRMERGNGSTEDITARVLDLASPIGKGQRGLIVAPP
KAGKTLLLQNIAQSIAANHPDCELMVLLIDERPEEVTEMHRLVQGEVVASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHKPKRF
FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDF
NRSGTRREELLTAQDELQKMWILRKIVHEMSEIDAMDFLISKLSMTKTNNEFFDAMRRQK
S
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgaatttaactgaattaaagaacaaaccaattagcgagttggttaacctggccgaggaa
atgggcctggaaaacatggcacgcgccagaaaacaagacatcattttctcgatccttaag
acgcacgcaaaaagcggtgaagatatctttggggatggggtattagaaattttacaggac
ggtttcggctttttacgctcagctgattcatcgtatctagcaggccctgacgatatttac
gtatcgccaagccaaatccgacgctttaacctgcgcaccggtgatacgattgctggaaag
attcgtccaccgaaagacagcgaacgttattttgcgcttctaaaaatccgcgaagttaac
ttcgacaagcctgaaaactcacgtaacaaaatcctctttgaaaaccttacaccgctacac
gcagcagatcgcttgcgcatggagcgtggtaacggttcgaccgaagacattacagcacgt
gtactagatttggcgtcacctatcggtaaaggccaacgtggtcttatcgtagcgccacct
aaagccggtaaaacactgcttcttcaaaatattgctcagtcaattgctgctaaccacccc
gattgtgagttaatggtattgcttatcgacgagcgcccggaagaagtaacggagatgcac
cgccttgttcaaggtgaagtggttgcatcaaccttcgatgagccagctagccgtcacgta
caagtggcagaaatggttatcgaaaaagccaaacgtcttgttgaacacaaaaaagacgtg
gttattttgctcgactcaatcacccgtcttgcgcgcgcatacaacacggttattccttca
tcgggtaaagtacttactggtggtgttgacgctaacgcgcttcataaaccaaagcgtttc
ttcggtgctgcccgtaacgtagaagagggcggaagtttaacgattatcgccactgcgctt
atcgataccggctctaaaatggatgaagttatctacgaagagtttaaaggtacaggtaac
atggaactacaccttaaccgtaagattgcggaaaaacgtgtattcccagctatcgacttt
aaccgctcaggtacccgtcgagaagagttactcaccgcgcaagatgaactacaaaaaatg
tggatccttcgcaagattgttcacgaaatgtctgagattgacgcgatggacttccttatt
agtaagttgtcgatgaccaagacgaacaacgagttcttcgacgcaatgcgccgacaaaag
agctag

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