Entry |
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Name |
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KO |
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Organism |
amc Alteromonas mediterranea DE
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Pathway |
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Brite |
KEGG Orthology (KO) [BR:amc00001]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MADE_1003525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:amc03019]
MADE_1003525
03009 Ribosome biogenesis [BR:amc03009]
MADE_1003525
Enzymes [BR:amc01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MADE_1003525
Messenger RNA biogenesis [BR:amc03019]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MADE_1003525
Ribosome biogenesis [BR:amc03009]
Prokaryotic type
rRNA helicases
MADE_1003525
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SSDB |
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Motif |
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Other DBs |
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LinkDB |
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Position |
complement(726284..728053)
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AA seq |
589 aa
MTTTVDMTFKDLNLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAA
FALPMLANIDPEQRKPQLLVLAPTRELAIQVAEAFQVYASFSQKIKVLPVYGGQSYDNQI
RQLKRGVQVVVGTPGRIIDHIKRKTLDLSELKYLVLDEADEMLRMGFIDDVELILSHAPE
ERQTALFSATMPGPIKKITQRYLKDPKHVKIASKVSTASTIRQRYCQIAPHHKLEALTRI
MEVEVFDGMIIFVRTKTATVELADKLSARGYDVEPLNGDIPQAARERTVEKLKQGKIDIL
VATDVVARGLDVERVSHVINYDIPYDSESYVHRIGRTGRAGRQGDAILFISHREKRLLFS
IEKTTKQPIEAMPIPSISEINETRLSRFKQSVAEATQDDSIESLMPIVEMIKEENEASPE
TIMAALLKIAQGDEPLILKESDRPDINSKPPRDNRDRNSRDGRDGRERKPRVPRGNRKPE
EGMQRFRIEVGHVHGAKPGNIVGAIANEANINSKHIGAIEIYDNFSTVDLPDGMPKETRD
TLSGTRVAGQRLNIREWSDTPPKRDGRGSRGDKGDRAPRGNRENRKRKN |
NT seq |
1770 nt +upstreamnt +downstreamnt
atgacaacaactgtcgacatgacatttaaagacctcaatttaccagaaccaatcttacaa
gcccttgaaaaagttggctacgagaaaccgtctcctattcaagctgagagtattcctctt
ttacttgaaggacacgacttactcggtcaggcacagacagggacaggaaaaaccgctgcg
tttgccctgcccatgttggcaaatatcgatcctgagcaacgtaagccgcaattactggta
ttggccccaacccgtgaattagcaattcaggttgcagaggcgtttcaggtttatgcgagc
tttagtcaaaaaattaaagtacttcccgtatacggcggccagtcgtacgacaaccaaatt
cgccagcttaagcgcggcgtgcaagtggttgttggtacaccagggcgtatcatcgaccat
atcaagcgcaaaacactagacttaagcgaacttaagtatttagtgctagatgaagcagat
gaaatgcttcgcatgggctttatcgatgacgttgagcttattcttagccacgcgccagaa
gagcgccaaactgcgctgttctcggcaaccatgcctggcccaatcaagaagattacccag
cgctatttgaaagatcctaagcacgtcaaaattgcgtctaaggtaagcactgccagcacc
attcgccagcgttactgccaaatcgcaccgcaccacaaacttgaagcgctaacccgcatc
atggaagtggaagtgttcgacggtatgattattttcgtacgcacgaaaaccgctaccgtg
gaacttgccgataagctatctgcccgtggttacgatgtagaaccactaaacggtgatatt
cctcaggcagcccgtgagcgtactgttgaaaagcttaaacagggtaaaatcgacattctt
gtagctactgacgtagtagcccgaggtcttgacgttgagcgtgtaagccacgttatcaac
tacgatatcccgtatgacagtgagtcttacgtacaccgtattggtcgtaccggtcgtgct
ggtcgtcaaggtgatgcaatcctatttatttctcaccgcgaaaagcgcttgttgttctct
atcgagaaaaccactaaacagcctattgaagcgatgcctattccttcaatcagcgaaatc
aatgagacacgcttaagccgtttcaaacagtcggttgccgaagcaacgcaagacgatagc
attgaatcattaatgcctattgttgagatgattaaagaagaaaacgaagcatcgcctgaa
accatcatggctgcgctacttaaaattgcgcaaggcgacgagccgttaattcttaaagaa
tcagatcgaccagacatcaacagcaagcctccacgcgataatcgtgatagaaactctcgc
gatggtcgtgatggccgcgaaagaaagccaagagtaccacgtggtaaccgcaagccagaa
gaaggcatgcagcgcttccgtattgaagtaggtcatgttcacggcgctaagcctggcaac
atcgttggcgctattgcgaacgaagcaaacataaactcgaagcacattggcgctatcgag
atttatgataacttcagtactgttgatttacctgacggtatgccaaaagaaacccgtgac
accctttcgggcacacgcgtagcaggtcagcgattgaacattcgtgaatggtcagacacg
ccacctaagcgcgacggtcgtggaagccgcggtgacaaaggtgatcgtgcacctagaggc
aaccgtgaaaaccgtaaacgtaagaactaa |