Alteromonas mediterranea DE: MADE_1004015
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Entry
MADE_1004015 CDS
T00747
Name
(GenBank) ssDNA exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
amc
Alteromonas mediterranea DE
Pathway
amc03410
Base excision repair
amc03430
Mismatch repair
amc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
amc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
MADE_1004015
03430 Mismatch repair
MADE_1004015
03440 Homologous recombination
MADE_1004015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amc03400
]
MADE_1004015
DNA repair and recombination proteins [BR:
amc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
MADE_1004015
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
MADE_1004015
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MADE_1004015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Peripla_BP_6
Motif
Other DBs
NCBI-ProteinID:
AEA96951
UniProt:
F2GA24
LinkDB
All DBs
Position
865447..867168
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AA seq
573 aa
AA seq
DB search
MILPIVRREISGASLSSDLHPVIDRIYRGRNIANIDDLENGLRGLTHFNALKGMPEAAQI
LATAIEQNKRIIIVGDFDADGATSTSVCILALRAMGFDNVDFLVPNRFDFGYGLSVPIVD
EAAKQGADIIVTVDNGISCIDGVTHAKGLGIQVVVTDHHLPGDVLPPADAIVNPNQPGCE
FPSKNLAGVGVAFYIMLALKAKLQQQGYFEKAGIAPPNLASLLDIVAVGTVADVVVLDKN
NRILVHQGLQRIRAGQCRPGIKALVEVANRDCAHLTSTDLGFVVGPRLNAAGRLDDMSQG
IACLLEDDTIQARMIAAELDALNKERREIETGMKAQAEMALEQMVLDEGDMPSALVVYRE
DFHQGVIGIVAGRLKEKYLKPVIAFAHQDDLIIKGSARSIPGVHIRDVLDEVNTRYPGVI
EKFGGHAMAAGLSLPVAKLRDFERAFIDIAGKHLAKLDGNHALLSDGDLSASELCLPFAH
LLRQAGPFGQGFESPLFDGEFSLLDQRLVGQKHLKMVLKGDGANEVDAIAFNVDLKAWPN
AMVKRVHVAYRLDINVFRGQETVQLIVEQIEAL
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atgattttgcctattgttcgccgcgagataagcggtgcatccttaagttccgacttacac
cccgttattgatagaatttaccgaggtcgtaatattgcgaatatcgatgatttggaaaac
gggcttagagggcttactcactttaacgcgctaaaaggaatgcctgaggccgcgcaaatt
cttgccacagcgatagaacaaaataaacgcattatcattgttggcgattttgatgccgac
ggtgcaactagtacgtcggtttgtattttggcgctacgggcaatgggctttgataacgta
gattttcttgtgcctaaccgattcgactttgggtacgggctcagcgttcctattgttgat
gaagcagccaagcagggcgcagatatcattgttaccgtggataacggcatatcgtgtatt
gacggtgttacccatgcaaaagggttaggaatacaagttgtcgttaccgatcaccacttg
ccgggcgatgtgcttccgccagctgatgcgatagtgaatcctaaccaacctgggtgcgag
ttcccttctaaaaatttggcaggggtgggcgttgctttttacatcatgcttgcgttaaaa
gccaagctacagcagcaagggtattttgaaaaagctggcatagctccacctaacttggca
tcactgcttgatatcgttgctgtaggtacggtggccgatgttgtcgtgttggataaaaat
aaccggatattagtacatcaaggccttcaacgtattcgtgcagggcagtgtaggcctggc
attaaagcgctggtggaagtggcaaatcgggattgtgcccacttaacgtcaacagattta
ggttttgtggtaggcccacgacttaatgccgctggacgcttagatgatatgtctcaaggc
attgcgtgtttattagaagatgacacgattcaagcgcgtatgattgccgccgaactcgat
gcgctcaacaaagagcgacgagaaatagaaacgggcatgaaagcgcaggcagaaatggca
ctagagcaaatggtacttgatgaaggcgatatgccaagcgcactggtggtctatcgcgaa
gactttcaccaaggtgttattggtattgtcgctgggcgtttaaaagagaagtaccttaag
cccgtgattgcctttgcgcaccaagatgaccttattattaaaggttctgctcgctctatt
cccggcgttcatattcgagacgtactcgatgaagttaatacacgataccctggcgttatc
gagaagttcggtggccatgcgatggcggcgggtcttagcctgccggtagctaaactgcgt
gactttgagcgtgcgtttatcgacattgccggtaaacatttagctaaattagatggaaac
catgccctgctttctgatggtgacttatccgccagcgaactgtgcttacccttcgcccat
ttgcttcgccaagcgggcccgttcggacaaggttttgagtcaccgctttttgacggtgaa
ttctcgcttcttgaccagcgcttagttgggcaaaaacaccttaagatggtgttaaaaggc
gacggggctaatgaagtcgatgctatagcgtttaatgtggacttgaaagcgtggcctaat
gccatggttaagcgtgtgcatgtagcttatcgccttgatattaacgtattcagaggacaa
gaaacggttcagcttattgttgagcaaatagaagccctgtag
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